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Zbtb40 Gene Detail
Summary
  • Symbol
    Zbtb40
  • Name
    zinc finger and BTB domain containing 40
  • Synonyms
    MGC:62412
  • Feature Type
    protein coding gene
  • IDs
    MGI:2682254
    NCBI Gene: 230848
  • Gene Overview
    MyGene.info: ZBTB40
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:136979732-137048801 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 69.05 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1116 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2682254
protein coding gene Chr4:136979732-137049444 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028977
protein coding gene Chr4:139577919-139647568 (-)
A/J MGP_AJ_G0028936
protein coding gene Chr4:133638223-133707022 (-)
AKR/J MGP_AKRJ_G0028888
protein coding gene Chr4:137488853-137557737 (-)
BALB/cJ MGP_BALBcJ_G0028960
protein coding gene Chr4:134302334-134371669 (-)
C3H/HeJ MGP_C3HHeJ_G0028674
protein coding gene Chr4:137782879-137853533 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029401
protein coding gene Chr4:144551390-144621272 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026672
protein coding gene Chr4:126664183-126734207 (-)
CAST/EiJ MGP_CASTEiJ_G0028106
protein coding gene Chr4:135911795-135999287 (-)
CBA/J MGP_CBAJ_G0028639
protein coding gene Chr4:148548717-148619190 (-)
DBA/2J MGP_DBA2J_G0028788
protein coding gene Chr4:134041057-134109930 (-)
FVB/NJ MGP_FVBNJ_G0028755
protein coding gene Chr4:133004526-133074038 (-)
LP/J MGP_LPJ_G0028887
protein coding gene Chr4:139661272-139731155 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028781
protein coding gene Chr4:152685310-152755155 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029439
protein coding gene Chr4:137964776-138034789 (-)
PWK/PhJ MGP_PWKPhJ_G0027826
protein coding gene Chr4:130835193-130904634 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027652
protein coding gene Chr4:133759636-133826610 (-)
WSB/EiJ MGP_WSBEiJ_G0028184
protein coding gene Chr4:138126087-138194870 (-)



Homology
more
  • Human Ortholog
    ZBTB40, zinc finger and BTB domain containing 40
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ZBTB40, zinc finger and BTB domain containing 40
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ZNF923
  • Links
    NCBI Gene ID: 9923
    neXtProt AC: NX_Q9NUA8
    UniProt: Q9NUA8

  • Chr Location
    1p36.12; chr1:22428838-22531157 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 8912
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: ZBTB40
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000060862 Ensembl Gene Model | MGI Sequence Detail 69070 C57BL/6J ±  kb
transcript ENSMUST00000049583 Ensembl | MGI Sequence Detail 7192 Not Applicable  
polypeptide ENSMUSP00000061899 Ensembl | MGI Sequence Detail 1258 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR000210 BTB/POZ domain
    IPR011333 SKP1/BTB/POZ domain superfamily
    IPR030404 Zinc finger and BTB domain-containing protein 40
    IPR036236 Zinc finger C2H2 superfamily
    IPR013087 Zinc finger C2H2-type
Molecular
Reagents
less
  • All nucleic 46
    cDNA 46

    Microarray probesets 3
Other
Accession IDs
less
MGI:2685417
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 8
  • Earliest
    J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory