About   Help   FAQ
Zbtb40
Gene Detail
 Symbol
Name
ID
Zbtb40
zinc finger and BTB domain containing 40
MGI:2682254
Synonyms MGC:62412
Feature Type protein coding gene
Genetic Map
Chromosome 4
69.05 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr4:136979732-137048801 bp, - strand
From VEGA annotation of GRCm38

  69070 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:8912  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Zbtb40

Human
homologs
Human Homolog ZBTB40, zinc finger and BTB domain containing 40
NCBI Gene ID 9923
neXtProt AC  NX_Q9NUA8
Human Synonyms  ZNF923
Human Chr (Location)  1p36; chr1:22451851-22531157 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(7) : Gene trapped(5) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Zbtb40 interacts with 323 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process cellular response to DNA damage stimulus
Component nucleus
Function metal ion binding
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (24)    Tissues (15)    Images (2)
Theiler Stages: 23
Assay TypeResults
RNA in situ 24
cDNA source data(45)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(45) cDNA(45)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000009824 (Evidence)
Ensembl Gene ModelENSMUSG00000060862 (Evidence)
Entrez Gene230848 (Evidence)
UniGene31068
DFCITC1597797, TC1609284, TC1677569
DoTSDT.40142902, DT.55270427
NIA Mouse Gene IndexU025676
Consensus CDS ProjectCCDS18814.1
International Mouse Knockout Project StatusZbtb40
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000009824 VEGA Gene Model | MGI Sequence Detail 69070 C57BL/6J ±  kb
transcript OTTMUST00000022755 VEGA | MGI Sequence Detail 7192 Not Applicable 
polypeptide OTTMUSP00000010384 VEGA | MGI Sequence Detail 1258 Not Applicable 

For the selected sequences
All sequences(34) RefSeq(6) UniProt(3)
Polymorphisms SNPs within 2kb(1115 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR013069 BTB/POZ
InterPro IPR011333 BTB/POZ fold
InterPro IPR000210 BTB/POZ-like
InterPro IPR007087 Zinc finger, C2H2
InterPro IPR015880 Zinc finger, C2H2-like
InterPro IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Protein Ontology PR:000017581 zinc finger and BTB domain-containing protein 40
References (Earliest) J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
(Latest) J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5
All references(33)
Other
accession IDs
MGI:2685417

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
08/12/2014
MGI 5.19
The Jackson Laboratory