About   Help   FAQ
Zbtb40
Gene Detail
Symbol

Name
ID
Zbtb40
zinc finger and BTB domain containing 40
MGI:2682254
Synonyms
MGC:62412
Feature Type
protein coding gene
Genetic Map
Chromosome 4
69.05 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr4:136979732-137048801 bp, - strand
From VEGA annotation of GRCm38

  69070 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:8912  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: ZBTB40
Gene Tree: Zbtb40

Human
homologs
ZBTB40, zinc finger and BTB domain containing 40
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 9923
neXtProt AC: NX_Q9NUA8

Human Synonyms: ZNF923

Human Chr (Location): 1p36; chr1:22428838-22531157 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(5) Targeted(3)
Genomic Mutations involving Zbtb40 (1)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Zbtb40 interacts with 322 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process cellular response to DNA damage stimulus
Component nucleus
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (24)    Tissues (15)    Images (2)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 24
cDNA source data(45)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase zbtb40    NEW 
Molecular
reagents
All nucleic(45) cDNA(45)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000009824 (Evidence)
Ensembl Gene Model ENSMUSG00000060862 (Evidence)
Entrez Gene 230848 (Evidence)
UniGene 31068
DFCI TC1609284, TC1677569, TC1597797
DoTS DT.40142902, DT.55270427
NIA Mouse Gene Index U025676
Consensus CDS Project CCDS18814.1
International Mouse Phenotyping Consortium Status Zbtb40
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000009824 VEGA Gene Model | MGI Sequence Detail 69070 C57BL/6J ±  kb
transcript OTTMUST00000022755 VEGA | MGI Sequence Detail 7192 Not Applicable 
polypeptide OTTMUSP00000010384 VEGA | MGI Sequence Detail 1258 Not Applicable 

For the selected sequences
All sequences(34) RefSeq(6) UniProt(3)
Polymorphisms
SNPs within 2kb(1115 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR013069 BTB/POZ
InterPro IPR011333 BTB/POZ fold
InterPro IPR000210 BTB/POZ-like
InterPro IPR007087 Zinc finger, C2H2
InterPro IPR015880 Zinc finger, C2H2-like
InterPro IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Protein Ontology PR:000017581 zinc finger and BTB domain-containing protein 40
References
(Earliest) J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
(Latest) J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5
All references(30)
Other
accession IDs
MGI:2685417

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
05/20/2015
MGI 5.22
The Jackson Laboratory