Slitrk5
Gene Detail

Symbol Name ID

Slitrk5 SLIT and NTRK-like family, member 5 MGI:2679448

Synonyms

2610019D03Rik

Feature Type

protein coding gene

Genetic Map

Chromosome 14

57.86 cM, cytoband E3
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr14:111675115-111683134 bp, + strand From Ensembl annotation of GRCm38   8020 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:9193  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Slitrk5

Human homologs

Human Homolog		SLITRK5, SLIT and NTRK-like family, member 5
NCBI Gene ID		26050
neXtProt AC		NX_O94991
Human Synonyms		bA364G4.2, LRRC11
Human Chr (Location)		13q31.2; chr13:88324870-88331871 (+)  GRCh37.p10

Alleles and phenotypes

All alleles(3) : Targeted(3)
 

Mice homozygous for a null allele have abnormal medium spiny neuron morphology and exhibit behavioral abnormalities.

 
Human Diseases Modeled Using Mouse Slitrk5 (1)    Alleles Annotated to Human Diseases(1)   

Gene Ontology (GO) classifications

All GO classifications: (12 annotations)

Process	adult behavior, axonogenesis, ...
Component	integral to membrane, membrane
Function	molecular_function

External Resources: FuncBase

Expression

Literature Summary: (3 records)
Data Summary: Results (40)    Tissues (40)   
Theiler Stages: 6, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 28

Assay Type	Results
RNA in situ	5
Northern blot	35

cDNA source data(7)
External Resources: Allen Institute   GENSAT   GEO   ArrayExpress

Molecular reagents

All nucleic(9) cDNA(7) Other(2)
Microarray probesets(3)

Other database links

Ensembl Gene Model	ENSMUSG00000033214 (Evidence)
Entrez Gene	75409 (Evidence)
DFCI	TC1582134, TC1597661, TC1650578
DoTS	DT.101270283, DT.55108081
NIA Mouse Gene Index	U015948
Consensus CDS Project	CCDS27328.1
International Mouse Knockout Project Status	Slitrk5

Sequences

Length	Strain/Species
genomic	ENSMUSG00000033214	Ensembl Gene Model | MGI Sequence Detail	8020	C57BL/6J
transcript	ENSMUST00000042767	Ensembl | MGI Sequence Detail	4806	Not Applicable
polypeptide	ENSMUSP00000041499	Ensembl | MGI Sequence Detail	957	Not Applicable

All sequences(25) RefSeq(3) UniProt(2)

Polymorphisms

SNPs(10 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR000483	Cysteine-rich flanking region, C-terminal
InterPro	IPR001611	Leucine-rich repeat
InterPro	IPR000372	Leucine-rich repeat-containing N-terminal
InterPro	IPR003591	Leucine-rich repeat, typical subtype
Protein Ontology	PR:000015241	SLIT and NTRK-like protein 5

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(28)

Other accession IDs

MGI:1922659