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Sh3tc1 Gene Detail
Summary
  • Symbol
    Sh3tc1
  • Name
    SH3 domain and tetratricopeptide repeats 1
  • Synonyms
    MGC:67153
  • Feature Type
    protein coding gene
  • IDs
    MGI:2678949
    NCBI Gene: 231147
  • Alliance
Location & Maps
more
  • Sequence Map
    Chr5:35697180-35739987 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      42808 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 18.60 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    SH3TC1, SH3 domain and tetratricopeptide repeats 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SH3TC1, SH3 domain and tetratricopeptide repeats 1
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 54436
    neXtProt AC: NX_Q8TE82
    UniProt: Q8TE82

  • Chr Location
    4p16.1; chr4:8182072-8241103 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    28 phenotype references
  • All Mutations and Alleles
    29
  • Chemically induced (ENU)
    1
  • Chemically induced (other)
    2
  • Gene trapped
    17
  • Radiation induced
    5
  • Spontaneous
    1
  • Targeted
    3
  • Genomic Mutations
    9 involving Sh3tc1
  • Incidental Mutations
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024850 VEGA Gene Model | MGI Sequence Detail 42808 C57BL/6J ±  kb
transcript OTTMUST00000138594 VEGA | MGI Sequence Detail 4246 Not Applicable  
polypeptide OTTMUSP00000072842 VEGA | MGI Sequence Detail 1346 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    368 from dbSNP Build 142
Protein
Information
less
  • UniProt
    11 Sequences
  • InterPro Domains
    IPR001452 SH3 domain
    IPR036028 SH3-like domain superfamily
    IPR011990 Tetratricopeptide-like helical domain superfamily
    IPR019734 Tetratricopeptide repeat
Molecular
Reagents
less
  • All nucleic 35
    cDNA 35

    Microarray probesets 2
References
more
  • Summaries
    All 46
    Developmental Gene Expression 1
    Diseases 1
    Phenotypes 28
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/05/2017
MGI 6.11
The Jackson Laboratory