About   Help   FAQ
Rdh19
Gene Detail
Symbol

Name
ID
Rdh19
retinol dehydrogenase 19
MGI:2678390
Synonyms
Rdhs, RDH-S
Feature Type
protein coding gene
Genetic Map
Chromosome 10
76.27 cM, cytoband D3
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr10:127849928-127861176 bp, + strand
From VEGA annotation of GRCm38

  11249 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:129514  Vertebrate Homology Class
1 human; 5 mouse; 2 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 8 western clawed frog; 1 zebrafish

Protein SuperFamily: retinol dehydrogenase
Gene Tree: Rdh19

Human
homologs
Human Homolog RDH16, retinol dehydrogenase 16 (all-trans)
NCBI Gene ID 8608
neXtProt AC  NX_O75452
Human Synonyms  RODH-4, SDR9C8
Human Chr (Location)  12q13.3; chr12:56951431-56959374 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Rdh19 interacts with 107 markers (Mir1a-1, Mir1a-2, Mir19a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (8)    Tissues (8)    Images (1)    Tissue x Stage Matrix (view)
Assay TypeResults
Northern blot 8
cDNA source data(4)
External Resources: GEO   Expression Atlas
Molecular
reagents
All nucleic(4) cDNA(4)
Microarray probesets(1)
Other database
links
VEGA Gene ModelOTTMUSG00000027664 (Evidence)
Ensembl Gene ModelENSMUSG00000054052 (Evidence)
Entrez Gene216453 (Evidence)
UniGene222953
NIA Mouse Gene IndexU063120
Consensus CDS ProjectCCDS24253.1
International Mouse Knockout Project StatusRdh19
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000027664 VEGA Gene Model | MGI Sequence Detail 11249 C57BL/6J ±  kb
transcript OTTMUST00000068447 VEGA | MGI Sequence Detail 1889 Not Applicable 
polypeptide OTTMUSP00000034614 VEGA | MGI Sequence Detail 318 Not Applicable 

For the selected sequences
All sequences(16) RefSeq(2) UniProt(4)
Polymorphisms
SNPs within 2kb(143 from dbSNP Build 137)    SNPs within 2kb including multiple locations(145)
Protein-related
information
ResourceIDDescription
InterPro IPR002347 Glucose/ribitol dehydrogenase
InterPro IPR016040 NAD(P)-binding domain
InterPro IPR020904 Short-chain dehydrogenase/reductase, conserved site
InterPro IPR002198 Short-chain dehydrogenase/reductase SDR
References
(Earliest) J:85943 Song MS, et al., Identification of a mouse short-chain dehydrogenase/reductase gene, retinol dehydrogenase-similar. Function of non-catalytic amino acid residues in enzyme activity. J Biol Chem. 2003 Oct 10;278(41):40079-87
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(15)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/18/2014
MGI 5.20
The Jackson Laboratory