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Abitram Gene Detail
Summary
  • Symbol
    Abitram
  • Name
    actin binding transcription modulator
  • Synonyms
    BC026590, Fam206a, simiate
  • Feature Type
    protein coding gene
  • IDs
    MGI:2677850
    NCBI Gene: 230234
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:56802345-56809601 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 31.66 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    24 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2677850
protein coding gene Chr4:56802329-56809605 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028311
protein coding gene Chr4:55564731-55571987 (+)
A/J MGP_AJ_G0028272
protein coding gene Chr4:53443005-53450261 (+)
AKR/J MGP_AKRJ_G0028221
protein coding gene Chr4:54916159-54923415 (+)
BALB/cJ MGP_BALBcJ_G0028291
protein coding gene Chr4:53598523-53605779 (+)
C3H/HeJ MGP_C3HHeJ_G0028012
protein coding gene Chr4:55425041-55432297 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028732
protein coding gene Chr4:57549199-57556455 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026038
protein coding gene Chr4:50249066-50256599 (+)
CAST/EiJ MGP_CASTEiJ_G0027450
protein coding gene Chr4:55130216-55137487 (+)
CBA/J MGP_CBAJ_G0027977
protein coding gene Chr4:59531485-59538741 (+)
DBA/2J MGP_DBA2J_G0028127
protein coding gene Chr4:53350071-53357327 (+)
FVB/NJ MGP_FVBNJ_G0028094
protein coding gene Chr4:52560050-52567306 (+)
LP/J MGP_LPJ_G0028226
protein coding gene Chr4:55665986-55673242 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028118
protein coding gene Chr4:62695257-62702513 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028768
protein coding gene Chr4:55094660-55101916 (+)
PWK/PhJ MGP_PWKPhJ_G0027175
protein coding gene Chr4:53331292-53338627 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027003
protein coding gene Chr4:54376098-54383376 (+)
WSB/EiJ MGP_WSBEiJ_G0027528
protein coding gene Chr4:55050147-55057403 (+)



Homology
more
  • Human Ortholog
    ABITRAM, actin binding transcription modulator
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ABITRAM, actin binding transcription modulator
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C9orf6, CG-8, FAM206A, Simiate
  • Links
    NCBI Gene ID: 54942
    neXtProt AC: NX_Q9NX38
    UniProt: Q9NX38

  • Chr Location
    chr9:108934393-108950745 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038827 Ensembl Gene Model | MGI Sequence Detail 7257 C57BL/6J ±  kb
transcript ENSMUST00000045368 Ensembl | MGI Sequence Detail 4275 Not Applicable  
polypeptide ENSMUSP00000047275 Ensembl | MGI Sequence Detail 193 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 52
    cDNA 52

    Microarray probesets 2
References
more
  • Summaries
    All 32
    Gene Ontology 5
    Phenotypes 8
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:239369 Derlig K, et al., Special characteristics of the transcription and splicing machinery in photoreceptor cells of the mammalian retina. Cell Tissue Res. 2015 Nov;362(2):281-94

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
02/18/2020
MGI 6.14
The Jackson Laboratory