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Focad Gene Detail
Summary
  • Symbol
    Focad
  • Name
    focadhesin
  • Synonyms
    BC057079, mKIAA1797
  • Feature Type
    protein coding gene
  • IDs
    MGI:2676921
    NCBI Gene: 230393
  • Gene Overview
    MyGene.info: FOCAD
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:88094630-88411011 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 41.40 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1519 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2676921
protein coding gene Chr4:88094629-88411011 (.)
129S1/SvImJ MGP_129S1SvImJ_G0028419
protein coding gene Chr4:87934075-88276760 (+)
A/J MGP_AJ_G0028380
protein coding gene Chr4:84895039-85202126 (+)
AKR/J MGP_AKRJ_G0028329
protein coding gene Chr4:86986388-87315781 (+)
BALB/cJ MGP_BALBcJ_G0028400
protein coding gene Chr4:85096414-85410269 (+)
C3H/HeJ MGP_C3HHeJ_G0028115
protein coding gene Chr4:87711830-88028312 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028839
protein coding gene Chr4:91322583-91653218 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026139
protein coding gene Chr4:80901199-81195187 (+)
CAST/EiJ MGP_CASTEiJ_G0027556
protein coding gene Chr4:85562158-85875171 (+)
CBA/J MGP_CBAJ_G0028084
protein coding gene Chr4:94138463-94481730 (+)
DBA/2J MGP_DBA2J_G0028233
protein coding gene Chr4:84652088-84958222 (+)
FVB/NJ MGP_FVBNJ_G0028199
protein coding gene Chr4:83598680-83920815 (+)
LP/J MGP_LPJ_G0028333
protein coding gene Chr4:88300256-88640231 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028228
protein coding gene Chr4:99124552-99472318 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028876
protein coding gene Chr4:87113276-87443692 (+)
PWK/PhJ MGP_PWKPhJ_G0027279
protein coding gene Chr4:82988299-83286205 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027104
protein coding gene Chr4:84617289-84952450 (+)
WSB/EiJ MGP_WSBEiJ_G0027632
protein coding gene Chr4:87335561-87648823 (+)



Homology
more
  • Human Ortholog
    FOCAD, focadhesin
  • Vertebrate Orthologs
    9
  • Human Ortholog
    FOCAD, focadhesin
    Orthology source: HomoloGene, HGNC
  • Synonyms
    KIAA1797
  • Links
    NCBI Gene ID: 54914
    neXtProt AC: NX_Q5VW36
    UniProt: Q5VW36

  • Chr Location
    9p21.3; chr9:20658309-20995955 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    14
  • Chemically induced (other)
    2
  • Gene trapped
    9
  • Radiation induced
    1
  • Targeted
    2
  • Genomic Mutations
    3 involving Focad
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 230393 NCBI Gene Model | MGI Sequence Detail 316382 C57BL/6J ±  kb
transcript NM_001081184 RefSeq | MGI Sequence Detail 5796 Not Specified  
polypeptide A2AKG8 UniProt | EBI | MGI Sequence Detail 1798 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 60
    cDNA 60

    Microarray probesets 3
References
more
  • Summaries
    All 32
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 8
  • Earliest
    J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory