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Mir196a-1 Gene Detail
Summary
  • Symbol
    Mir196a-1
  • Name
    microRNA 196a-1
  • Synonyms
    Mirn196, Mirn196a-1, mmu-mir-196a-1
  • Feature Type
    miRNA gene
  • IDs
    MGI:2676860
    NCBI Gene: 387191
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr11:96265164-96265265 bp, + strand
  • From miRBase annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 59.80 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    24 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2676860
miRNA gene Chr11:96265164-96265265 (+)
129S1/SvImJ MGP_129S1SvImJ_G0007863
miRNA gene Chr11:98572524-98572625 (+)
A/J MGP_AJ_G0007856
miRNA gene Chr11:94549811-94549912 (+)
AKR/J MGP_AKRJ_G0007831
miRNA gene Chr11:97465164-97465265 (+)
BALB/cJ MGP_BALBcJ_G0007835
miRNA gene Chr11:95045367-95045468 (+)
C3H/HeJ MGP_C3HHeJ_G0007781
miRNA gene Chr11:97606636-97606737 (+)
C57BL/6NJ MGP_C57BL6NJ_G0008014
miRNA gene Chr11:101652050-101652151 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0007155
miRNA gene Chr11:92036319-92036420 (+)
CAST/EiJ MGP_CASTEiJ_G0007675
miRNA gene Chr11:98425538-98425639 (+)
CBA/J MGP_CBAJ_G0007752
miRNA gene Chr11:105816379-105816480 (+)
DBA/2J MGP_DBA2J_G0007787
miRNA gene Chr11:94117026-94117127 (+)
FVB/NJ MGP_FVBNJ_G0007806
miRNA gene Chr11:93596120-93596221 (+)
LP/J MGP_LPJ_G0007865
miRNA gene Chr11:99112718-99112819 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0007776
miRNA gene Chr11:105814011-105814112 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0008010
miRNA gene Chr11:97781304-97781405 (+)
PWK/PhJ MGP_PWKPhJ_G0007602
miRNA gene Chr11:95067358-95067459 (+)
SPRET/EiJ MGP_SPRETEiJ_G0007497
miRNA gene Chr11:97507028-97507129 (+)
WSB/EiJ MGP_WSBEiJ_G0007742
miRNA gene Chr11:97667514-97667615 (+)



Homology
more
  • Human Ortholog
    MIR196A1, microRNA 196a-1
  • Human Ortholog
    MIR196A1, microRNA 196a-1
    Orthology source: HGNC
  • Synonyms
    mir-196a-1, MIRN196-1, MIRN196A1
  • Links
    NCBI Gene ID: 406972

  • Chr Location
    chr17:48632490-48632559 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 2 alleles in 2 genetic backgrounds
    2 phenotypes from multigenic genotypes
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a targeted deletion are viable with no observed pathologies.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • Assay Results
  • Tissues
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    • All Sequences
    • RefSeq
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 387191 NCBI Gene Model | MGI Sequence Detail 102 C57BL/6J ±  kb
    transcript NR_029721 RefSeq | MGI Sequence Detail 102 C57BL/6  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 3
      Other 3
    Other Database
    Links
    less
    References
    more
    • Summaries
      All 33
      Developmental Gene Expression 10
      Gene Ontology 5
      Phenotypes 10
    • Earliest
      J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
    • Latest
      J:236416 Go H, et al., MiR-196a regulates heme oxygenase-1 by silencing Bach1 in the neonatal mouse lung. Am J Physiol Lung Cell Mol Physiol. 2016 Aug 1;311(2):L400-11

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    02/05/2019
    MGI 6.13
    The Jackson Laboratory