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Khdc1a Gene Detail
Summary
  • Symbol
    Khdc1a
  • Name
    KH domain containing 1A
  • Synonyms
    Ndg1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2676610
    NCBI Gene: 368204
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:21349677-21352199 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 6.59 cM, cytoband A4
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    249 from dbSNP Build 142
  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2676610
protein coding gene Chr1:21349641-21352200 (+)
129S1/SvImJ MGP_129S1SvImJ_G0015878
protein coding gene Chr1:19009329-19013441 (+)
A/J MGP_AJ_G0015859
protein coding gene Chr1:18763358-18766899 (+)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0015816
protein coding gene Chr1:18473810-18496171 (+)
C3H/HeJ MGP_C3HHeJ_G0015650
protein coding gene Chr1:18868585-18870952 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016270
protein coding gene Chr1:19907718-19913112 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0013989
protein coding gene Chr1:16938287-16940840 (+)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0015622
protein coding gene Chr1:20368517-20375231 (+)
DBA/2J MGP_DBA2J_G0015721
protein coding gene Chr1:18269682-18282575 (+)
FVB/NJ no annotation
LP/J MGP_LPJ_G0015793
protein coding gene Chr1:19281097-19283450 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015744
protein coding gene Chr1:21322982-21326300 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016316
protein coding gene Chr1:18807251-18810029 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    KHDC1, KH domain containing 1
  • Vertebrate Orthologs
    8
  • Human Ortholog
    KHDC1, KH domain containing 1
    Orthology source: HGNC
  • Synonyms
    bA257K9.4, C6orf147, C6orf148, Em:AC019205.8, KHDC1L, NDG1
  • Links
    NCBI Gene ID: 80759
    neXtProt AC: NX_Q4VXA5
    UniProt: Q4VXA5

  • Chr Location
    6q13; chr6:73241314-73310365 (-)  GRCh38.p7

  • Human Ortholog
    KHDC1L, KH domain containing 1 like
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 100129128
    neXtProt AC: NX_Q5JSQ8
    UniProt: Q5JSQ8

  • Chr Location
    6q13; chr6:73223544-73225452 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 368204 NCBI Gene Model | MGI Sequence Detail 2523 C57BL/6J ±  kb
transcript NM_183322 RefSeq | MGI Sequence Detail 1950 C57BL/6  
polypeptide Q3UWR2 UniProt | EBI | MGI Sequence Detail 166 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 7
    Primer pair 2
    Other 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:2138405, MGI:2138722
References
more
  • Summaries
    All 22
    Developmental Gene Expression 1
    Gene Ontology 3
  • Earliest
    J:11444 Motoyama N, et al., Somatic mutation in constant regions of mouse lambda 1 light chains. Proc Natl Acad Sci U S A. 1991 Sep 15;88(18):7933-7
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
12/03/2019
MGI 6.14
The Jackson Laboratory