About   Help   FAQ
Rd3l Gene Detail
Summary
  • Symbol
    Rd3l
  • Name
    retinal degeneration 3-like
  • Feature Type
    protein coding gene
  • IDs
    MGI:2675860
    NCBI Gene: 217874
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:111979191-111981317 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 61.14 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    90 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2675860
protein coding gene Chr12:111979111-111981317 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020147
protein coding gene Chr12:114415727-114417933 (-)
A/J MGP_AJ_G0020103
protein coding gene Chr12:110010368-110012572 (-)
AKR/J MGP_AKRJ_G0020078
protein coding gene Chr12:113177205-113179409 (-)
BALB/cJ MGP_BALBcJ_G0020088
protein coding gene Chr12:110428652-110430858 (-)
C3H/HeJ MGP_C3HHeJ_G0019890
protein coding gene Chr12:113666665-113668869 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020533
protein coding gene Chr12:117966663-117968869 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018146
protein coding gene Chr12:106440966-106443173 (-)
CAST/EiJ MGP_CASTEiJ_G0019431
protein coding gene Chr12:108517676-108519887 (-)
CBA/J MGP_CBAJ_G0019857
protein coding gene Chr12:122470891-122473095 (-)
DBA/2J MGP_DBA2J_G0019974
protein coding gene Chr12:109487543-109489753 (-)
FVB/NJ MGP_FVBNJ_G0019959
protein coding gene Chr12:108297837-108300041 (-)
LP/J MGP_LPJ_G0020049
protein coding gene Chr12:114239004-114241210 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019997
protein coding gene Chr12:125564340-125566546 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020562
protein coding gene Chr12:112686415-112688619 (-)
PWK/PhJ MGP_PWKPhJ_G0019192
protein coding gene Chr12:104136460-104138762 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018995
protein coding gene Chr12:106843247-106845922 (-)
WSB/EiJ MGP_WSBEiJ_G0019490
protein coding gene Chr12:113592427-113594631 (-)



Homology
more
  • Human Ortholog
    RD3L, retinal degeneration 3 like
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RD3L, retinal degeneration 3 like
    Orthology source: HomoloGene, HGNC
  • Synonyms
    TDRD9AS1, TDRD9-AS1
  • Links
    NCBI Gene ID: 647286
    neXtProt AC: NX_P0DJH9
    UniProt: P0DJH9

  • Chr Location
    14q32.33; chr14:103940426-103942308 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 19151
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: RD3L
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 217874 NCBI Gene Model | MGI Sequence Detail 2127 C57BL/6J ±  kb
transcript NM_001127685 RefSeq | MGI Sequence Detail 761 Not Specified  
polypeptide NP_001121157 RefSeq | MGI Sequence Detail 197 Not Specified  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR028092 Retinal degeneration protein 3
Molecular
Reagents
less
  • All nucleic 14
    cDNA 14
References
more
  • Summaries
    All 14
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
09/15/2020
MGI 6.15
The Jackson Laboratory