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Rd3l Gene Detail
Summary
  • Symbol
    Rd3l
  • Name
    retinal degeneration 3-like
  • Feature Type
    protein coding gene
  • IDs
    MGI:2675860
    NCBI Gene: 217874
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:111979191-111981128 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 61.14 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    89 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2675860
protein coding gene Chr12:111979111-111981317 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020147
protein coding gene Chr12:114415727-114417933 (-)
A/J MGP_AJ_G0020103
protein coding gene Chr12:110010368-110012572 (-)
AKR/J MGP_AKRJ_G0020078
protein coding gene Chr12:113177205-113179409 (-)
BALB/cJ MGP_BALBcJ_G0020088
protein coding gene Chr12:110428652-110430858 (-)
C3H/HeJ MGP_C3HHeJ_G0019890
protein coding gene Chr12:113666665-113668869 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020533
protein coding gene Chr12:117966663-117968869 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018146
protein coding gene Chr12:106440966-106443173 (-)
CAST/EiJ MGP_CASTEiJ_G0019431
protein coding gene Chr12:108517676-108519887 (-)
CBA/J MGP_CBAJ_G0019857
protein coding gene Chr12:122470891-122473095 (-)
DBA/2J MGP_DBA2J_G0019974
protein coding gene Chr12:109487543-109489753 (-)
FVB/NJ MGP_FVBNJ_G0019959
protein coding gene Chr12:108297837-108300041 (-)
LP/J MGP_LPJ_G0020049
protein coding gene Chr12:114239004-114241210 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019997
protein coding gene Chr12:125564340-125566546 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020562
protein coding gene Chr12:112686415-112688619 (-)
PWK/PhJ MGP_PWKPhJ_G0019192
protein coding gene Chr12:104136460-104138762 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018995
protein coding gene Chr12:106843247-106845922 (-)
WSB/EiJ MGP_WSBEiJ_G0019490
protein coding gene Chr12:113592427-113594631 (-)



Homology
more
  • Human Ortholog
    RD3L, retinal degeneration 3 like
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RD3L, retinal degeneration 3 like
    Orthology source: HomoloGene, HGNC
  • Synonyms
    TDRD9AS1, TDRD9-AS1
  • Links
    NCBI Gene ID: 647286
    neXtProt AC: NX_P0DJH9
    UniProt: P0DJH9

  • Chr Location
    14q32.33; chr14:103940426-103942308 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 19151
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: RD3L
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 217874 NCBI Gene Model | MGI Sequence Detail 1938 C57BL/6J ±  kb
transcript NM_001127685 RefSeq | MGI Sequence Detail 761 Not Specified  
polypeptide NP_001121157 RefSeq | MGI Sequence Detail 197 Not Specified  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR028092 Retinal degeneration protein 3
Molecular
Reagents
less
  • All nucleic 14
    cDNA 14
References
more
  • Summaries
    All 14
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory