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Bpifb3
Gene Detail
Symbol

Name
ID
Bpifb3
BPI fold containing family B, member 3
MGI:2675077
Synonyms
Rya3
Feature Type
protein coding gene
Genetic Map
Chromosome 2
75.99 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr2:153918230-153932996 bp, + strand
From VEGA annotation of GRCm38

  14767 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:18807  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

HCOP human homology predictions: BPIFB3
Gene Tree: Bpifb3

Human
homologs
BPIFB3, BPI fold containing family B, member 3
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 359710
neXtProt AC: NX_P59826

Human Synonyms: C20orf185, LPLUNC3, RYA3

Human Chr (Location): 20q11.21; chr20:33055331-33073637 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for disruptions in this gene display a normal phenotype.
 
Interactions
Bpifb3 interacts with 49 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process biological_process
Component cytoplasm, extracellular region
Function lipid binding
External Resources: FuncBase
Expression
cDNA source data(5)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(5) cDNA(5)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000016852 (Evidence)
Ensembl Gene Model ENSMUSG00000068008 (Evidence)
Entrez Gene 378700 (Evidence)
UniGene 55392
DFCI TC1589591
DoTS DT.101338524
NIA Mouse Gene Index U002674
Consensus CDS Project CCDS16921.1
International Mouse Phenotyping Consortium Status Bpifb3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000016852 VEGA Gene Model | MGI Sequence Detail 14767 C57BL/6J ±  kb
transcript OTTMUST00000040943 VEGA | MGI Sequence Detail 1741 Not Applicable 
polypeptide OTTMUSP00000018318 VEGA | MGI Sequence Detail 473 Not Applicable 

For the selected sequences
All sequences(23) RefSeq(4) UniProt(2)
Polymorphisms
SNPs within 2kb(388 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR017943 Bactericidal permeability-increasing protein, alpha/beta domain
InterPro IPR001124 Lipid-binding serum glycoprotein, C-terminal
InterPro IPR017942 Lipid-binding serum glycoprotein, N-terminal
Protein Ontology PR:000009899 BPI fold-containing family B member 3
References
(Earliest) J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
(Latest) J:174122 Bingle CD, et al., Systematic nomenclature for the PLUNC/PSP/BSP30/SMGB proteins as a subfamily of the BPI fold-containing superfamily. Biochem Soc Trans. 2011 Aug 1;39(4):977-83
All references(28)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory