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Bpifb3
Gene Detail
 Symbol
Name
ID
Bpifb3
BPI fold containing family B, member 3
MGI:2675077
Synonyms Rya3
Feature Type protein coding gene
Genetic Map
Chromosome 2
75.99 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr2:153918230-153932996 bp, + strand
From VEGA annotation of GRCm38

  14767 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:18807  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

Gene Tree: Bpifb3

Human
homologs
Human Homolog BPIFB3, BPI fold containing family B, member 3
NCBI Gene ID 359710
neXtProt AC  NX_P59826
Human Synonyms  C20orf185, dJ726C3.4, LPLUNC3, RYA3
Human Chr (Location)  20q11.21; chr20:33055424-33073628 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for disruptions in this gene display a normal phenotype.
 
Interactions
Bpifb3 interacts with 49 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process biological_process
Component cytoplasm, extracellular region
Function lipid binding
External Resources: FuncBase
Expression
cDNA source data(5)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(5) cDNA(5)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000016852 (Evidence)
Ensembl Gene ModelENSMUSG00000068008 (Evidence)
Entrez Gene378700 (Evidence)
UniGene55392
DFCITC1589591
DoTSDT.101338524
NIA Mouse Gene IndexU002674
Consensus CDS ProjectCCDS16921.1
International Mouse Knockout Project StatusBpifb3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000016852 VEGA Gene Model | MGI Sequence Detail 14767 C57BL/6J ±  kb
transcript OTTMUST00000040942 VEGA | MGI Sequence Detail 1821 Not Applicable 
polypeptide OTTMUSP00000018317 VEGA | MGI Sequence Detail 473 Not Applicable 

For the selected sequences
All sequences(23) RefSeq(4) UniProt(2)
Polymorphisms SNPs within 2kb(388 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR017943 Bactericidal permeability-increasing protein, alpha/beta domain
InterPro IPR001124 Lipid-binding serum glycoprotein, C-terminal
InterPro IPR017942 Lipid-binding serum glycoprotein, N-terminal
Protein Ontology PR:000009899 BPI fold-containing family B member 3
References (Earliest) J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
(Latest) J:174122 Bingle CD, et al., Systematic nomenclature for the PLUNC/PSP/BSP30/SMGB proteins as a subfamily of the BPI fold-containing superfamily. Biochem Soc Trans. 2011 Aug 1;39(4):977-83
All references(30)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory