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Sspo Gene Detail
Summary
  • Symbol
    Sspo
  • Name
    SCO-spondin
  • Synonyms
    C79529, Scospondin
  • Feature Type
    protein coding gene
  • IDs
    MGI:2674311
    NCBI Gene: 243369
  • Gene Overview
    MyGene.info: SSPO
Location & Maps
more
  • Sequence Map
    Chr6:48448229-48501250 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      53022 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 23.42 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    SSPO, SCO-spondin
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SSPO, SCO-spondin
    Orthology source: HGNC, HomoloGene
  • Links
    NCBI Gene ID: 23145
    neXtProt AC: NX_A2VEC9

  • Chr Location
    7q36.1; chr7:149776042-149833965 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 45453
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: SSPO
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000045396 VEGA Gene Model | MGI Sequence Detail 53022 C57BL/6J ±  kb
transcript OTTMUST00000126915 VEGA | MGI Sequence Detail 15571 Not Applicable  
polypeptide OTTMUSP00000068597 VEGA | MGI Sequence Detail 5144 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    336 from dbSNP Build 142
Protein
Information
less
  • UniProt
    5 Sequences
  • Protein Ontology
    PR:000015658 SCO-spondin
  • InterPro Domains
    IPR000421 Coagulation factor 5/8 C-terminal domain
    IPR006207 Cystine knot, C-terminal
    IPR008979 Galactose-binding domain-like
    IPR023415 Low-density lipoprotein (LDL) receptor class A, conserved site
    IPR002172 Low-density lipoprotein (LDL) receptor class A repeat
    IPR008037 Pacifastin domain
    IPR000884 Thrombospondin type-1 (TSP1) repeat
    IPR002919 Trypsin Inhibitor-like, cysteine rich domain
    IPR014853 Uncharacterised domain, cysteine-rich
    IPR001846 von Willebrand factor, type D domain
    IPR001007 VWFC domain
Molecular
Reagents
less
  • All nucleic 9
    cDNA 8
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:2141753
References
more
  • Summaries
    All 27
    Developmental Gene Expression 4
    Gene Ontology 2
    Phenotypes 1
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory