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Sspo
Gene Detail
 Symbol
Name
ID
Sspo
SCO-spondin
MGI:2674311
Synonyms C79529, Scospondin
Feature Type protein coding gene
Genetic Map
Chromosome 6
23.42 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr6:48448229-48501250 bp, + strand
From NCBI annotation of GRCm38

  53022 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:45453  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Sspo

Human
homologs
Human Homolog SSPO, SCO-spondin
NCBI Gene ID 23145
neXtProt AC  NX_A2VEC9
Human Chr (Location)  7q36.1; chr7:149776042-149833965 (+)  GRCh38
Alleles
and
phenotypes
All alleles(1) : Gene trapped(1)
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process cell adhesion
Component cytoplasm, extracellular region
Function hormone activity
External Resources: FuncBase
Expression
Literature Summary: (4 records)
Data Summary: Results (29)    Tissues (13)   
Theiler Stages: 11, 23, 25, 28
Assay TypeResults
Immunohistochemistry 13
RNA in situ 10
Northern blot 5
RT-PCR 1
cDNA source data(8)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(9) cDNA(8) Primer pair(1)
Microarray probesets(3)
Other database
links
Ensembl Gene ModelENSMUSG00000029797 (Evidence)
Entrez Gene243369 (Evidence)
UniGene25039
DFCITC1603497, TC1655214
DoTSDT.101230000, DT.101369619, DT.101369620, DT.101369621, DT.55212348
NIA Mouse Gene IndexU006815
Consensus CDS ProjectCCDS57420.1
International Mouse Knockout Project StatusSspo
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 243369 NCBI Gene Model | MGI Sequence Detail 53022 C57BL/6J ±  kb
transcript NM_173428 RefSeq | MGI Sequence Detail 15586 C57BL/6 
polypeptide Q8CG65 UniProt | EBI | MGI Sequence Detail 4998 Not Applicable 

For the selected sequences
All sequences(34) RefSeq(11) UniProt(3)
Polymorphisms SNPs within 2kb(335 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000421 Coagulation factor 5/8 C-terminal type domain
InterPro IPR006207 Cystine knot, C-terminal
InterPro IPR008979 Galactose-binding domain-like
InterPro IPR001545 Gonadotropin, beta subunit
InterPro IPR023415 Low-density lipoprotein (LDL) receptor class A, conserved site
InterPro IPR002172 Low-density lipoprotein (LDL) receptor class A repeat
InterPro IPR000884 Thrombospondin, type 1 repeat
InterPro IPR002919 Trypsin Inhibitor-like, cysteine rich domain
InterPro IPR014853 Uncharacterised domain, cysteine-rich
InterPro IPR001007 von Willebrand factor, type C
InterPro IPR001846 von Willebrand factor, type D domain
InterPro IPR006552 VWC out
Protein Ontology PR:000015658 SCO-spondin
Graphical View of Protein Domain Structure
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(32)
Other
accession IDs
MGI:2141753

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory