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Col27a1
Gene Detail
Symbol

Name
ID
Col27a1
collagen, type XXVII, alpha 1
MGI:2672118
Synonyms
5730512J02Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 4
33.96 cM, cytoband C1
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr4:63214004-63334991 bp, + strand
From VEGA annotation of GRCm38

  120988 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:69400  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

Gene Tree: Col27a1

Human
homologs
Human Homolog COL27A1, collagen, type XXVII, alpha 1
NCBI Gene ID 85301
neXtProt AC  NX_Q8IZC6
Human Synonyms  STLS
Human Chr (Location)  9q32; chr9:114155488-114312511 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human COL27A1
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for an in frame deletion display neonatal lethality, respiratory failure, and severe chondrodysplasia.
 
Interactions
Col27a1 interacts with 248 markers (Mir1a-1, Mir1a-2, Mir9-1, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (7 records)
Data Summary: Results (245)    Tissues (54)    Images (24)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 212
RT-PCR 33
cDNA source data(29)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(33) Genomic(1) cDNA(29) Primer pair(3)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000000244 (Evidence)
Ensembl Gene ModelENSMUSG00000045672 (Evidence)
Entrez Gene373864 (Evidence)
UniGene194116
DFCITC1586272, TC1590419, TC1593458, TC1597027, TC1610957, TC1621042, TC1630508, TC1651469
DoTSDT.101266944, DT.101283556, DT.487483, DT.87026828, DT.91372979, DT.91596889, DT.94127230
NIA Mouse Gene IndexU004401
Consensus CDS ProjectCCDS18250.1
International Mouse Knockout Project StatusCol27a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000000244 VEGA Gene Model | MGI Sequence Detail 120988 C57BL/6J ±  kb
transcript OTTMUST00000000701 VEGA | MGI Sequence Detail 7612 Not Applicable 
polypeptide OTTMUSP00000000312 VEGA | MGI Sequence Detail 1845 Not Applicable 

For the selected sequences
All sequences(76) RefSeq(16) UniProt(5)
Polymorphisms
SNPs within 2kb(1099 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008160 Collagen triple helix repeat
InterPro IPR008985 Concanavalin A-like lectin/glucanases superfamily
InterPro IPR000885 Fibrillar collagen, C-terminal
InterPro IPR001791 Laminin G domain
Protein Ontology PR:000005710 collagen alpha-1(XXVII) chain
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:182341 Plumb DA, et al., Collagen XXVII organises the pericellular matrix in the growth plate. PLoS One. 2011;6(12):e29422
All references(35)
Other
accession IDs
MGI:1913902, MGI:2140286

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
10/21/2014
MGI 5.20
The Jackson Laboratory