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Med13l
Gene Detail
Symbol

Name
ID
Med13l
mediator complex subunit 13-like
MGI:2670178
Synonyms
2210413I17Rik, 6330591G05Rik, 9030618F05Rik, mKIAA1025, Thrap2, Trap240L
Feature Type
protein coding gene
Genetic Map
Chromosome 5
59.10 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr5:118560719-118765435 bp, + strand
From Ensembl annotation of GRCm38

  204717 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:25256  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

HCOP human homology predictions: MED13L
Gene Tree: Med13l

Human
homologs
MED13L, mediator complex subunit 13-like
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 23389
neXtProt AC: NX_Q71F56

Human Synonyms: PROSIT240, THRAP2, TRAP240L

Human Chr (Location): 12q24.21; chr12:115955771-116277203 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human MED13L

Mutations,
alleles, and
phenotypes
All mutations/alleles(43) : Gene trapped(41) Targeted(2)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Med13l interacts with 429 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
Expression
cDNA source data(138)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase med13l    NEW 
Molecular
reagents
All nucleic(139) Genomic(1) cDNA(138)
Microarray probesets(5)
Other database
links
Ensembl Gene Model ENSMUSG00000018076 (Evidence)
Entrez Gene 76199 (Evidence)
UniGene 206238
DFCI TC1674094, TC1666856, TC1604311, TC1588282, TC1579297, TC1602490
DoTS DT.101736886, DT.101225314, DT.40171919, DT.532259, DT.99851399
NIA Mouse Gene Index U273291, U057040
Consensus CDS Project CCDS57375.1
International Mouse Phenotyping Consortium Status Med13l
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000018076 Ensembl Gene Model | MGI Sequence Detail 204717 C57BL/6J ±  kb
transcript ENSMUST00000100816 Ensembl | MGI Sequence Detail 9293 Not Applicable 
polypeptide ENSMUSP00000098379 Ensembl | MGI Sequence Detail 2207 Not Applicable 

For the selected sequences
All sequences(55) RefSeq(8) UniProt(5)
Polymorphisms
SNPs within 2kb(1099 from dbSNP Build 137)    SNPs within 2kb including multiple locations(1101)
Protein-related
information
ResourceIDDescription
InterPro IPR009401 Mediator complex, subunit Med13
InterPro IPR021643 Mediator complex, subunit Med13, N-terminal, metazoa/fungi
Protein Ontology PR:000010285 mediator of RNA polymerase II transcription subunit 13-like
References
(Earliest) J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(44)
Other
accession IDs
MGI:1918805, MGI:1922081, MGI:1923449

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/30/2015
MGI 5.22
The Jackson Laboratory