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Hist1h3a Gene Detail
Summary
  • Symbol
    Hist1h3a
  • Name
    histone cluster 1, H3a
  • Feature Type
    protein coding gene
  • IDs
    MGI:2668828
    NCBI Gene: 360198
  • Member of
    Hist1 cluster
  • Gene Overview
    MyGene.info: HIST1H3D
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:23761885-23762386 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 9.91 cM, cytoband A2-A3
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    42 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2668828
protein coding gene Chr13:23761853-23762386 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020366
protein coding gene Chr13:21205757-21207436 (-)
A/J MGP_AJ_G0020315
protein coding gene Chr13:20815006-20816335 (-)
AKR/J MGP_AKRJ_G0020295
protein coding gene Chr13:21068654-21069187 (-)
BALB/cJ MGP_BALBcJ_G0020313
protein coding gene Chr13:20811477-20812010 (-)
C3H/HeJ MGP_C3HHeJ_G0020117
protein coding gene Chr13:21141231-21141764 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020750
protein coding gene Chr13:21985879-21987200 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018338
protein coding gene Chr13:19588803-19589330 (-)
CAST/EiJ MGP_CASTEiJ_G0026774
protein coding gene Chr3:95903419-95904033 (-)
CBA/J MGP_CBAJ_G0020071
protein coding gene Chr13:22842727-22845019 (-)
DBA/2J MGP_DBA2J_G0020197
protein coding gene Chr13:20343084-20344000 (-)
FVB/NJ MGP_FVBNJ_G0020181
protein coding gene Chr13:19994745-19995542 (-)
LP/J MGP_LPJ_G0020270
protein coding gene Chr13:21515052-21516479 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020208
protein coding gene Chr13:23135887-23136420 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020792
protein coding gene Chr13:20921333-20921866 (-)
PWK/PhJ MGP_PWKPhJ_G0019388
protein coding gene Chr13:20374759-20375467 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019205
protein coding gene Chr13:19726947-19727470 (-)
WSB/EiJ MGP_WSBEiJ_G0019694
protein coding gene Chr13:21058558-21059926 (-)



Homology
more
  • Human Ortholog
    HIST1H3D, histone cluster 1 H3 family member d
  • Vertebrate Orthologs
    9
  • Human Ortholog
    HIST1H3D, histone cluster 1 H3 family member d
    Orthology source: HomoloGene
  • Synonyms
    H3/b, H3FB
  • Links
    NCBI Gene ID: 8351
    neXtProt AC: NX_P68431
    UniProt: P68431

  • Chr Location
    6p22.2; chr6:26196784-26199293 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Hist1h3a
  • Incidental Mutations
    APF , CvDC
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 360198 NCBI Gene Model | MGI Sequence Detail 502 C57BL/6J ±  kb
transcript NM_013550 RefSeq | MGI Sequence Detail 502 C57BL/6  
polypeptide NP_038578 RefSeq | MGI Sequence Detail 136 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 6
    Genomic 1
    cDNA 5

    Microarray probesets 3
References
more
  • Summaries
    All 27
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 8
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:224007 Tang MC, et al., Contribution of the two genes encoding histone variant h3.3 to viability and fertility in mice. PLoS Genet. 2015 Feb;11(2):e1004964

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory