Speer2 Gene Detail

Summary

• Symbol
  Speer2
• Name
  spermatogenesis associated glutamate (E)-rich protein 2
• Synonyms
  SPEER-2

• Feature Type
  protein coding gene
• IDs
  MGI:2668488
  NCBI Gene: 224318
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr16:69856874-69863744 bp, - strand
• From Ensembl annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 40.11 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  59 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2668488	protein coding gene	Chr16:69856874-69863762 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0022948	protein coding gene	Chr16:69658277-69667688 (-)
A/J	MGP_AJ_G0022916	protein coding gene	Chr16:66605195-66612785 (-)
AKR/J	MGP_AKRJ_G0022886	protein coding gene	Chr16:68655818-68662790 (-)
BALB/cJ	MGP_BALBcJ_G0022918	protein coding gene	Chr16:66913942-66923712 (-)
C3H/HeJ	MGP_C3HHeJ_G0022680	protein coding gene	Chr16:69080929-69088925 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0023366	protein coding gene	Chr16:71813127-71828798 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020869	protein coding gene	Chr16:65406918-65411419 (-)
CAST/EiJ	MGP_CASTEiJ_G0022203	protein coding gene	Chr16:69388778-69390878 (-)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0022783	protein coding gene	Chr16:66417161-66422875 (-)
FVB/NJ	MGP_FVBNJ_G0022757	protein coding gene	Chr16:65911736-65917056 (-)
LP/J	MGP_LPJ_G0022853	protein coding gene	Chr16:69475194-69482800 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0022776	protein coding gene	Chr16:77153591-77167232 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0023382	protein coding gene	Chr16:68909991-68921693 (-)
PWK/PhJ	MGP_PWKPhJ_G0030311	protein coding gene	Chr7:90918-92834 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0021775	protein coding gene	Chr16:68527722-68530162 (-)
WSB/EiJ	MGP_WSBEiJ_G0022250	protein coding gene	Chr16:68995471-69001687 (-)

Homology

• HomoloGene
  Vertebrate Homology Class 69402
  27 mouse
  
• Gene Tree
  Speer2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Incidental Mutations
  Mutagenetix , APF , CvDC
• Find Mice (IMSR)
  19 strains or lines available

Gene Ontology
(GO)
Classifications

• External Resources
  FuncBase

Expression

• Assay Results
  631
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Interactions

• Speer2 interacts with 29 markers (Mir20a, Mir34a, Mir190b, ...) View All

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  4
• UniProt
  3
• CCDS
  CCDS37375.1
• UniGene
  212743

• Ensembl
  ENSMUSG00000063163 (Evidence)
• NCBI Gene
  224318

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000063163	Ensembl Gene Model | MGI Sequence Detail	6871	C57BL/6J
transcript	ENSMUST00000076500	Ensembl | MGI Sequence Detail	1118	Not Applicable
polypeptide	ENSMUSP00000075821	Ensembl | MGI Sequence Detail	264	Not Applicable

Protein
Information

• UniProt
  3 Sequences
• InterPro Domains
  IPR006907 Domain of unknown function DUF622

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 3
• Earliest
  J:83573 Spiess AN, et al., SPEER--A New Family of Testis-Specific Genes from the Mouse. Biol Reprod. 2003 Jun;68(6):2044-54
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Speer2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141719	Chr16:69863792-69863807 (-)	-56 bp
Tssr141718	Chr16:69863718-69863731 (-)	19 bp
Tssr141717	Chr16:69861790-69861799 (-)	1,949 bp