About   Help   FAQ
Sdr16c5 Gene Detail
Summary
  • Symbol
    Sdr16c5
  • Name
    short chain dehydrogenase/reductase family 16C, member 5
  • Synonyms
    Rdhe2, Scdr9
  • Feature Type
    protein coding gene
  • IDs
    MGI:2668443
    NCBI Gene: 242285
Location & Maps
more
  • Genetic Map
    Chromosome 4, 2.23 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    SDR16C5, short chain dehydrogenase/reductase family 16C, member 5
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SDR16C5, short chain dehydrogenase/reductase family 16C, member 5
    Orthology source: HomoloGene
  • Synonyms
    EPHD-2, RDH#2, RDHE2, RDH-E2, retSDR2
  • Links
    NCBI Gene ID: 195814
    neXtProt AC: NX_Q8N3Y7

  • Chr Location
    8q12.1; chr8:56300011-56320776 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000004400 VEGA Gene Model | MGI Sequence Detail 23728 C57BL/6J ±  kb
transcript OTTMUST00000009972 VEGA | MGI Sequence Detail 1385 Not Applicable  
polypeptide OTTMUSP00000004777 VEGA | MGI Sequence Detail 309 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    131 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 3
References
more
  • Summaries
    All 24
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
08/17/2016
MGI 6.05
The Jackson Laboratory