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Sdr16c5 Gene Detail
Summary
  • Symbol
    Sdr16c5
  • Name
    short chain dehydrogenase/reductase family 16C, member 5
  • Synonyms
    Rdhe2, Scdr9
  • Feature Type
    protein coding gene
  • IDs
    MGI:2668443
    NCBI Gene: 242285
  • Alliance
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:3995942-4019663 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 2.23 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    131 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2668443
protein coding gene Chr4:3995936-4019663 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028028
protein coding gene Chr4:498098-512279 (-)
A/J MGP_AJ_G0027986
protein coding gene Chr4:578125-592340 (-)
AKR/J MGP_AKRJ_G0027952
protein coding gene Chr4:511215-525412 (-)
BALB/cJ MGP_BALBcJ_G0027998
protein coding gene Chr4:535922-550125 (-)
C3H/HeJ MGP_C3HHeJ_G0027728
protein coding gene Chr4:681930-696109 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028441
protein coding gene Chr4:669286-698455 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025785
protein coding gene Chr4:509965-524313 (-)
CAST/EiJ MGP_CASTEiJ_G0027181
protein coding gene Chr4:581843-598611 (-)
CBA/J MGP_CBAJ_G0027703
protein coding gene Chr4:549358-563525 (-)
DBA/2J MGP_DBA2J_G0027843
protein coding gene Chr4:532796-547001 (-)
FVB/NJ MGP_FVBNJ_G0027810
protein coding gene Chr4:465902-480072 (-)
LP/J MGP_LPJ_G0027954
protein coding gene Chr4:549184-563357 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027843
protein coding gene Chr4:723423-737620 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028500
protein coding gene Chr4:505058-520509 (-)
PWK/PhJ MGP_PWKPhJ_G0026903
protein coding gene Chr4:611473-629415 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026733
protein coding gene Chr4:544529-558442 (-)
WSB/EiJ MGP_WSBEiJ_G0027261
protein coding gene Chr4:656736-670929 (-)



Homology
more
  • Human Ortholog
    SDR16C5, short chain dehydrogenase/reductase family 16C member 5
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SDR16C5, short chain dehydrogenase/reductase family 16C member 5
    Orthology source: HomoloGene, HGNC
  • Synonyms
    EPHD-2, RDH#2, RDHE2, RDH-E2, retSDR2
  • Links
    NCBI Gene ID: 195814
    neXtProt AC: NX_Q8N3Y7
    UniProt: Q8N3Y7

  • Chr Location
    8q12.1; chr8:56299648-56320776 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 242285 NCBI Gene Model | MGI Sequence Detail 23722 C57BL/6J ±  kb
transcript NM_181989 RefSeq | MGI Sequence Detail 1379 Not Specified  
polypeptide Q7TQA3 UniProt | EBI | MGI Sequence Detail 309 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 3
References
more
  • Summaries
    All 25
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/11/2019
MGI 6.14
The Jackson Laboratory