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Tnn Gene Detail
Summary
  • Symbol
    Tnn
  • Name
    tenascin N
  • Synonyms
    tenascin-W, Tnw
  • Feature Type
    protein coding gene
  • IDs
    MGI:2665790
    NCBI Gene: 329278
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:160085029-160153580 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 69.40 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    796 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2665790
protein coding gene Chr1:160085029-160153692 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016640
protein coding gene Chr1:165258363-165341678 (-)
A/J MGP_AJ_G0016621
protein coding gene Chr1:158561723-158631446 (-)
AKR/J MGP_AKRJ_G0016587
protein coding gene Chr1:163409153-163479275 (-)
BALB/cJ MGP_BALBcJ_G0016582
protein coding gene Chr1:159111686-159181819 (-)
C3H/HeJ MGP_C3HHeJ_G0016406
protein coding gene Chr1:163564131-163649776 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017043
protein coding gene Chr1:170877208-170947626 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014752
protein coding gene Chr1:150717820-150784982 (-)
CAST/EiJ MGP_CASTEiJ_G0015986
protein coding gene Chr1:163199430-163272466 (-)
CBA/J MGP_CBAJ_G0016381
protein coding gene Chr1:176929607-177009536 (-)
DBA/2J MGP_DBA2J_G0016487
protein coding gene Chr1:157536925-157607098 (-)
FVB/NJ MGP_FVBNJ_G0016485
protein coding gene Chr1:155947027-156015185 (-)
LP/J MGP_LPJ_G0016558
protein coding gene Chr1:166369988-166444118 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016510
protein coding gene Chr1:184439882-184513849 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017079
protein coding gene Chr1:163213979-163293519 (-)
PWK/PhJ MGP_PWKPhJ_G0015772
protein coding gene Chr1:156680004-156750704 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015559
protein coding gene Chr1:162063786-162131062 (-)
WSB/EiJ MGP_WSBEiJ_G0016048
protein coding gene Chr1:163390403-163463149 (-)



Homology
more
  • Human Ortholog
    TNN, tenascin N
  • Vertebrate Orthologs
    9
  • Human Ortholog
    TNN, tenascin N
    Orthology source: HomoloGene, HGNC
  • Synonyms
    TNW, TN-W
  • Links
    NCBI Gene ID: 63923
    neXtProt AC: NX_Q9UQP3
    UniProt: Q9UQP3

  • Chr Location
    1q25.1; chr1:175067858-175148066 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 18634
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: TNN
  • Gene Tree
    Tnn
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000026725 Ensembl Gene Model | MGI Sequence Detail 68552 C57BL/6J ±  kb
transcript ENSMUST00000039178 Ensembl | MGI Sequence Detail 5817 Not Applicable  
polypeptide ENSMUSP00000039452 Ensembl | MGI Sequence Detail 1560 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 3
References
more
  • Summaries
    All 31
    Developmental Gene Expression 7
    Gene Ontology 5
    Phenotypes 4
  • Earliest
    J:83982 Neidhardt J, et al., Tenascin-N: characterization of a novel member of the tenascin family that mediates neurite repulsion from hippocampal explants. Mol Cell Neurosci. 2003 Jun;23(2):193-209
  • Latest
    J:279273 Chen G, et al., Regional difference in microRNA regulation in the skull vault. Dev Dyn. 2019 Oct;248(10):1009-1019

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
12/03/2019
MGI 6.14
The Jackson Laboratory