Tpt1-ps6 Pseudogene Detail

Summary

• Symbol
  Tpt1-ps6
• Name
  tumor protein, translationally-controlled, pseudogene 6
• Synonyms
  Gm16469

• Feature Type
  pseudogene
• IDs
  MGI:2665000
  NCBI Gene: 632454
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:100812141-100812663 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 44.63 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  17 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2665000	pseudogene	ChrX:100812096-100812865 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014661	pseudogene	ChrX:98313234-98313756 (+)
A/J	MGP_AJ_G0014669	pseudogene	ChrX:98290025-98290547 (+)
AKR/J	MGP_AKRJ_G0014595	pseudogene	ChrX:101128534-101129183 (+)
BALB/cJ	MGP_BALBcJ_G0014617	pseudogene	ChrX:97035391-97035918 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0015103	pseudogene	ChrX:101217821-101220912 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0014078	pseudogene	ChrX:83003476-83003998 (+)
CBA/J	MGP_CBAJ_G0014439	pseudogene	ChrX:104364017-104370885 (+)
DBA/2J	MGP_DBA2J_G0014524	pseudogene	ChrX:97505311-97505958 (+)
FVB/NJ	MGP_FVBNJ_G0014002	pseudogene	Chr9:34048494-34049293 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0014549	pseudogene	ChrX:108896164-108896686 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015069	pseudogene	ChrX:97986011-97986533 (+)
PWK/PhJ	MGP_PWKPhJ_G0013883	pseudogene	ChrX:80606656-80607268 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Tpt1-ps6
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  2

• Ensembl
  ENSMUSG00000084284 (Evidence)
• NCBI Gene
  632454

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084284	Ensembl Gene Model | MGI Sequence Detail	523	C57BL/6J
transcript	ENSMUST00000121768	Ensembl | MGI Sequence Detail	523	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:3645088

References

• Summaries
  All 8

  Phenotypes 1
• Earliest
  J:83803 Fiucci G, et al., Genomic organization and expression of mouse Tpt1 gene. Genomics. 2003 Jun;81(6):570-8