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Mark1 Gene Detail
Summary
  • Symbol
    Mark1
  • Name
    MAP/microtubule affinity regulating kinase 1
  • Synonyms
    B930025N23Rik, Emk3
  • Feature Type
    protein coding gene
  • IDs
    MGI:2664902
    NCBI Gene: 226778
  • Gene Overview
    MyGene.info: MARK1
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:184896789-184999570 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 89.26 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1501 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2664902
protein coding gene Chr1:184896424-184999571 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016912
protein coding gene Chr1:191596712-191707388 (-)
A/J MGP_AJ_G0016891
protein coding gene Chr1:183778026-183880302 (-)
AKR/J MGP_AKRJ_G0016856
protein coding gene Chr1:189195209-189301129 (-)
BALB/cJ MGP_BALBcJ_G0016849
protein coding gene Chr1:184413941-184518295 (-)
C3H/HeJ MGP_C3HHeJ_G0016673
protein coding gene Chr1:190038102-190145308 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017312
protein coding gene Chr1:197718858-197823155 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0015019
protein coding gene Chr1:174773645-174874239 (-)
CAST/EiJ MGP_CASTEiJ_G0016256
protein coding gene Chr1:189454998-189571598 (-)
CBA/J MGP_CBAJ_G0016647
protein coding gene Chr1:205091456-205204255 (-)
DBA/2J MGP_DBA2J_G0016753
protein coding gene Chr1:182534872-182642241 (-)
FVB/NJ MGP_FVBNJ_G0016749
protein coding gene Chr1:180635518-180741312 (-)
LP/J MGP_LPJ_G0016828
protein coding gene Chr1:192754513-192860506 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016781
protein coding gene Chr1:211992650-212104321 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017349
protein coding gene Chr1:189043170-189160810 (-)
PWK/PhJ MGP_PWKPhJ_G0016043
protein coding gene Chr1:181737743-181844283 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015819
protein coding gene Chr1:188017349-188123103 (-)
WSB/EiJ MGP_WSBEiJ_G0016318
protein coding gene Chr1:189224661-189330027 (-)



Homology
more
  • Human Ortholog
    MARK1, microtubule affinity regulating kinase 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    MARK1, microtubule affinity regulating kinase 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    MARK, Par1c, Par-1c
  • Links
    NCBI Gene ID: 4139
    neXtProt AC: NX_Q9P0L2
    UniProt: Q9P0L2

  • Chr Location
    1q41; chr1:220528183-220664457 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 49552
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: MARK1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    3 phenotype references
Mice homozygous for a knock-out allele exhibit no obvious defects in lung epithelium morphology or apical cytoskeletal organization.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000026620 Ensembl Gene Model | MGI Sequence Detail 102782 C57BL/6J ±  kb
transcript ENSMUST00000027929 Ensembl | MGI Sequence Detail 4221 Not Applicable  
polypeptide ENSMUSP00000027929 Ensembl | MGI Sequence Detail 795 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 60
    Genomic 2
    cDNA 58

    Microarray probesets 8
Other
Accession IDs
less
MGI:2138592
References
more
  • Summaries
    All 32
    Developmental Gene Expression 3
    Gene Ontology 7
    Phenotypes 3
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:238422 Fumoto K, et al., Modulation of apical constriction by Wnt signaling is required for lung epithelial shape transition. Development. 2017 Jan 01;144(1):151-162

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/04/2018
MGI 6.13
The Jackson Laboratory