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Dsg1c Gene Detail
Summary
  • Symbol
    Dsg1c
  • Name
    desmoglein 1 gamma
  • Synonyms
    Dsg6
  • Feature Type
    protein coding gene
  • IDs
    MGI:2664358
    NCBI Gene: 211924
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr18:20247340-20285031 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 11.26 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    42 from dbSNP Build 142
  • Strain Annotations
    9
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2664358
protein coding gene Chr18:20247340-20285031 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0024141
protein coding gene Chr18:17286736-17333808 (+)
AKR/J MGP_AKRJ_G0024108
protein coding gene Chr18:17808936-17866027 (+)
BALB/cJ MGP_BALBcJ_G0024140
protein coding gene Chr18:17309381-17353687 (+)
C3H/HeJ MGP_C3HHeJ_G0023908
protein coding gene Chr18:17732022-17780017 (+)
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0022026
protein coding gene Chr18:16473484-16522525 (+)
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J MGP_DBA2J_G0024008
protein coding gene Chr18:17035898-17094517 (+)
FVB/NJ MGP_FVBNJ_G0023973
protein coding gene Chr18:16814196-16859663 (+)
LP/J MGP_LPJ_G0024091
protein coding gene Chr18:17882418-17925801 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    DSG1, desmoglein 1
  • Human Ortholog
    DSG1, desmoglein 1
    Orthology source: HGNC
  • Synonyms
    CDHF4, DG1, DSG, EPKHE, EPKHIA, PPKS1, SPPK1
  • Links
    NCBI Gene ID: 1828
    neXtProt AC: NX_Q02413
    UniProt: Q02413

  • Chr Location
    18q12.1; chr18:31318089-31359246 (+)  GRCh38.p7

  • HCOP
    human homology predictions: DSG1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    2 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 211924 NCBI Gene Model | MGI Sequence Detail 37692 C57BL/6J ±  kb
    transcript NM_181680 RefSeq | MGI Sequence Detail 4088 Not Specified  
    polypeptide Q7TSF0 UniProt | EBI | MGI Sequence Detail 911 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 5
      cDNA 4
      Primer pair 1

      Microarray probesets 1
    References
    more
    • Summaries
      All 29
      Developmental Gene Expression 9
      Gene Ontology 5
      Phenotypes 2
    • Earliest
      J:82819 Kljuic A, et al., A novel mouse desmosomal cadherin family member, desmoglein 1gamma. Exp Dermatol. 2003 Feb;12(1):20-9
    • Latest
      J:253459 Inoue SI, et al., Activated Braf induces esophageal dilation and gastric epithelial hyperplasia in mice. Hum Mol Genet. 2017 Dec 1;26(23):4715-4727

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    last database update
    10/08/2019
    MGI 6.14
    The Jackson Laboratory