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Rbm28
Gene Detail
Symbol

Name
ID
Rbm28
RNA binding motif protein 28
MGI:2655711
Synonyms
2810480G15Rik, MGC:12075, MGC:38664
Feature Type
protein coding gene
Genetic Map
Chromosome 6
12.33 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr6:29123573-29165006 bp, - strand
From VEGA annotation of GRCm38

  41434 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:135952  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: RBM28
Gene Tree: Rbm28

Human
homologs
RBM28, RNA binding motif protein 28
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 55131
neXtProt AC: NX_Q9NW13

Human Synonyms: ANES

Human Chr (Location): 7q32.1; chr7:128310383-128343913 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human RBM28

Mutations,
alleles, and
phenotypes
All mutations/alleles(13) : Gene trapped(11) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Rbm28 interacts with 226 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process mRNA processing, RNA splicing
Component nucleolus, nucleus, ...
Function nucleic acid binding, nucleotide binding, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (22)    Tissues (22)    Images (4)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 20
RT-PCR 2
cDNA source data(122)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase rbm28    NEW 
Molecular
reagents
All nucleic(123) cDNA(122) Primer pair(1)
Microarray probesets(7)
Other database
links
VEGA Gene Model OTTMUSG00000035837 (Evidence)
Ensembl Gene Model ENSMUSG00000029701 (Evidence)
Entrez Gene 68272 (Evidence)
UniGene 40802
DFCI TC1596761, TC1575461, TC1617833, TC1601169
DoTS DT.524319, DT.101389254
NIA Mouse Gene Index U027108
PDB 1X4H
Consensus CDS Project CCDS51733.1
International Mouse Phenotyping Consortium Status Rbm28
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000035837 VEGA Gene Model | MGI Sequence Detail 41434 C57BL/6J ±  kb
transcript OTTMUST00000091787 VEGA | MGI Sequence Detail 4468 Not Applicable 
polypeptide OTTMUSP00000050588 VEGA | MGI Sequence Detail 750 Not Applicable 

For the selected sequences
All sequences(54) RefSeq(5) UniProt(3)
Polymorphisms
SNPs within 2kb(468 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR012677 Nucleotide-binding, alpha-beta plait
InterPro IPR000504 RNA recognition motif domain
Protein Ontology PR:000013793 RNA-binding protein 28
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:193822 Lumayag S, et al., Inactivation of the microRNA-183/96/182 cluster results in syndromic retinal degeneration. Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):E507-16
All references(35)
Other
accession IDs
MGI:2141434

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory