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Col23a1 Gene Detail
Summary
  • Symbol
    Col23a1
  • Name
    collagen, type XXIII, alpha 1
  • Synonyms
    2810458L13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2653243
    NCBI Gene: 237759
Location & Maps
more
  • Sequence Map
    Chr11:51289920-51583918 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      293999 bp   ±  kb flank

  • Genome Browsers
Homology
more
  • Human Ortholog
    COL23A1, collagen type XXIII alpha 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    COL23A1, collagen type XXIII alpha 1
    Orthology source: HomoloGene
  • Links
    NCBI Gene ID: 91522
    neXtProt AC: NX_Q86Y22

  • Chr Location
    5q35.3; chr5:178237616-178590555 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Targeted
    2
  • Genomic Mutations
    1 involving Col23a1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005601 VEGA Gene Model | MGI Sequence Detail 293999 C57BL/6J ±  kb
transcript OTTMUST00000012461 VEGA | MGI Sequence Detail 5658 Not Applicable  
polypeptide OTTMUSP00000005760 VEGA | MGI Sequence Detail 532 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    2235 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000005707 collagen alpha-1(XXIII) chain
  • InterPro Domains
    IPR008160 Collagen triple helix repeat
Molecular
Reagents
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  • All nucleic 32
    Genomic 1
    cDNA 31

    Microarray probesets 6
Other
Accession IDs
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MGI:1920044, MGI:2144160
References
more
  • Summaries
    All 35
    Developmental Gene Expression 7
    Gene Ontology 2
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:226941 Akerberg BN, et al., Endocardial Brg1 disruption illustrates the developmental origins of semilunar valve disease. Dev Biol. 2015 Nov 1;407(1):158-72

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
04/26/2016
MGI 6.03
The Jackson Laboratory