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Col23a1
Gene Detail
Symbol

Name
ID
Col23a1
collagen, type XXIII, alpha 1
MGI:2653243
Synonyms
2810458L13Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 11
31.03 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr11:51289920-51583918 bp, + strand
From VEGA annotation of GRCm38

  293999 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:72101  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 2 zebrafish

HCOP human homology predictions: COL23A1
Gene Tree: Col23a1

Human
homologs
COL23A1, collagen, type XXIII, alpha 1
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 91522
neXtProt AC: NX_Q86Y22

Human Chr (Location): 5q35.3; chr5:178237616-178590555 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Gene trapped(1) Targeted(2)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Col23a1 interacts with 375 markers (Mir1b, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process protein homotrimerization
Component cell surface, collagen trimer, ...
Function heparin binding, protein homodimerization activity
External Resources: FuncBase
Expression
Literature Summary: (5 records)
Data Summary: Results (89)    Tissues (73)    Images (17)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 89
cDNA source data(31)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(32) Genomic(1) cDNA(31)
Microarray probesets(6)
Other database
links
VEGA Gene Model OTTMUSG00000005601 (Evidence)
Ensembl Gene Model ENSMUSG00000063564 (Evidence)
Entrez Gene 237759 (Evidence)
UniGene 154093
DFCI TC1583826, TC1599757
DoTS DT.40171272
NIA Mouse Gene Index U012569
Consensus CDS Project CCDS24652.1
International Mouse Phenotyping Consortium Status Col23a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005601 VEGA Gene Model | MGI Sequence Detail 293999 C57BL/6J ±  kb
transcript OTTMUST00000012461 VEGA | MGI Sequence Detail 5658 Not Applicable 
polypeptide OTTMUSP00000005760 VEGA | MGI Sequence Detail 532 Not Applicable 

For the selected sequences
All sequences(28) RefSeq(4) UniProt(2)
Polymorphisms
SNPs within 2kb(2237 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008160 Collagen triple helix repeat
Protein Ontology PR:000005707 collagen alpha-1(XXIII) chain
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)
Other
accession IDs
MGI:1920044, MGI:2144160

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory