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Col23a1 Gene Detail
Summary
  • Symbol
    Col23a1
  • Name
    collagen, type XXIII, alpha 1
  • Synonyms
    2810458L13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2653243
    NCBI Gene: 237759
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:51180747-51474745 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 31.03 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2235 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2653243
 protein coding gene Chr11:51180508-51474752 (+)
129S1/SvImJ MGP_129S1SvImJ_G0018267
 protein coding gene Chr11:50513043-50831421 (+)
A/J MGP_AJ_G0018236
 protein coding gene Chr11:48620328-48918219 (+)
AKR/J MGP_AKRJ_G0018206
 protein coding gene Chr11:50146265-50454822 (+)
BALB/cJ MGP_BALBcJ_G0018207
 protein coding gene Chr11:48921938-49214148 (+)
C3H/HeJ MGP_C3HHeJ_G0018018
 protein coding gene Chr11:50185871-50479640 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018657
 protein coding gene Chr11:52050548-52367594 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016309
 protein coding gene Chr11:46195409-46482872 (+)
CAST/EiJ MGP_CASTEiJ_G0017582
 protein coding gene Chr11:50167618-50474818 (+)
CBA/J MGP_CBAJ_G0017993
 protein coding gene Chr11:54496465-54822349 (+)
DBA/2J MGP_DBA2J_G0018100
 protein coding gene Chr11:48335455-48627066 (+)
FVB/NJ MGP_FVBNJ_G0018095
 protein coding gene Chr11:48031521-48331489 (+)
LP/J MGP_LPJ_G0018176
 protein coding gene Chr11:50943638-51256262 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0018118
 protein coding gene Chr11:55905300-56243924 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018700
 protein coding gene Chr11:50238627-50552560 (+)
PWK/PhJ MGP_PWKPhJ_G0017358
 protein coding gene Chr11:48840956-49146542 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017153
 protein coding gene Chr11:49975542-50286161 (+)
WSB/EiJ MGP_WSBEiJ_G0017630
 protein coding gene Chr11:49888416-50205108 (+)



Homology
more
  • Human Ortholog
    COL23A1, collagen type XXIII alpha 1 chain
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    COL23A1, collagen type XXIII alpha 1 chain
  • Links
    NCBI Gene ID: 91522
    neXtProt AC: NX_Q86Y22
    UniProt: Q86Y22

  • Chr Location
    5q35.3; chr5:178237476-178590393 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    876
  • Tissues
    117
  • cDNA Data
    34
  • Literature Summary
    12
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000063564 Ensembl Gene Model | MGI Sequence Detail 293999 C57BL/6J ±  kb
transcript ENSMUST00000102765 Ensembl | MGI Sequence Detail 5658 Not Applicable  
polypeptide ENSMUSP00000099826 Ensembl | MGI Sequence Detail 532 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 41
    Genomic 2
    cDNA 36
    Primer pair 3

    Microarray probesets 6
Other
Accession IDs
less
MGI:1920044, MGI:2144160
References
more
  • Summaries
    All 46
    Developmental Gene Expression 12
    Gene Ontology 4
    Phenotypes 7
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:332240 Feng W, et al., Single-cell transcriptomic analysis identifies murine heart molecular features at embryonic and neonatal stages. Nat Commun. 2022 Dec 27;13(1):7960
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory