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Cldn17 Gene Detail
Summary
  • Symbol
    Cldn17
  • Name
    claudin 17
  • Feature Type
    protein coding gene
  • IDs
    MGI:2652030
    NCBI Gene: 239931
  • Gene Overview
    MyGene.info: CLDN17
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:88505807-88506978 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 51.12 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    45 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2652030
protein coding gene Chr16:88505807-88506978 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022983
protein coding gene Chr16:89309429-89310674 (-)
A/J MGP_AJ_G0022951
protein coding gene Chr16:85167369-85168540 (-)
AKR/J MGP_AKRJ_G0022921
protein coding gene Chr16:87750502-87751673 (-)
BALB/cJ MGP_BALBcJ_G0022953
protein coding gene Chr16:85696985-85698156 (-)
C3H/HeJ MGP_C3HHeJ_G0022715
protein coding gene Chr16:88319484-88320655 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023400
protein coding gene Chr16:92179223-92180394 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020904
protein coding gene Chr16:83005486-83006661 (-)
CAST/EiJ MGP_CASTEiJ_G0022237
protein coding gene Chr16:88749384-88750553 (-)
CBA/J MGP_CBAJ_G0022684
protein coding gene Chr16:96132867-96134038 (-)
DBA/2J MGP_DBA2J_G0022818
protein coding gene Chr16:85097558-85098729 (-)
FVB/NJ MGP_FVBNJ_G0022793
protein coding gene Chr16:84195232-84196403 (-)
LP/J MGP_LPJ_G0022887
protein coding gene Chr16:88997225-88998436 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022812
protein coding gene Chr16:100670584-100671755 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023418
protein coding gene Chr16:88252045-88253216 (-)
PWK/PhJ MGP_PWKPhJ_G0021980
protein coding gene Chr16:85253511-85254688 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021810
protein coding gene Chr16:87806952-87808127 (-)
WSB/EiJ MGP_WSBEiJ_G0022285
protein coding gene Chr16:88484917-88486088 (-)



Homology
more
  • Human Ortholog
    CLDN17, claudin 17
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CLDN17, claudin 17
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 26285
    neXtProt AC: NX_P56750
    UniProt: P56750

  • Chr Location
    21q21.3; chr21:30165923-30166653 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 239931 NCBI Gene Model | MGI Sequence Detail 1172 C57BL/6J ±  kb
transcript NM_181490 RefSeq | MGI Sequence Detail 1172 C57BL/6  
polypeptide Q8BXA6 UniProt | EBI | MGI Sequence Detail 224 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    cDNA 5
    Primer pair 1

    Microarray probesets 1
References
more
  • Summaries
    All 27
    Developmental Gene Expression 4
    Gene Ontology 3
    Phenotypes 6
  • Earliest
    J:80501 Gitton Y, et al., A gene expression map of human chromosome 21 orthologues in the mouse. Nature. 2002 Dec 5;420(6915):586-90
  • Latest
    J:262380 Watson-Scales S, et al., Analysis of motor dysfunction in Down Syndrome reveals motor neuron degeneration. PLoS Genet. 2018 May;14(5):e1007383

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support.
last database update
11/06/2018
MGI 6.13
The Jackson Laboratory