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Atp10d Pseudogene Detail
Summary
  • Symbol
    Atp10d
  • Name
    ATPase, class V, type 10D
  • Synonyms
    9830145H18Rik, D5Buc24e, IMAGE:1069176
  • Feature Type
    polymorphic pseudogene
  • IDs
    MGI:2450125
    NCBI Gene: 231287
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:72203329-72298771 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 38.44 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    416 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2450125
polymorphic pseudogene Chr5:72203329-72298775 (+)
129S1/SvImJ MGP_129S1SvImJ_G0009944
polymorphic pseudogene Chr5:72109492-72211042 (+)
A/J MGP_AJ_G0009928
polymorphic pseudogene Chr5:69416041-69513972 (+)
AKR/J MGP_AKRJ_G0009911
polymorphic pseudogene Chr5:71633604-71742165 (+)
BALB/cJ MGP_BALBcJ_G0009912
polymorphic pseudogene Chr5:70087224-70181264 (+)
C3H/HeJ MGP_C3HHeJ_G0009844
polymorphic pseudogene Chr5:72005183-72103921 (+)
C57BL/6NJ MGP_C57BL6NJ_G0010161
polymorphic pseudogene Chr5:75100630-75201676 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0008954
polymorphic pseudogene Chr5:65146905-65242431 (+)
CAST/EiJ MGP_CASTEiJ_G0009662
polymorphic pseudogene Chr5:71124507-71226969 (+)
CBA/J MGP_CBAJ_G0009818
polymorphic pseudogene Chr5:77502145-77601780 (+)
DBA/2J MGP_DBA2J_G0009846
polymorphic pseudogene Chr5:69476910-69572363 (+)
FVB/NJ MGP_FVBNJ_G0009864
polymorphic pseudogene Chr5:68654530-68750352 (+)
LP/J MGP_LPJ_G0009941
polymorphic pseudogene Chr5:72600593-72698202 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0009830
polymorphic pseudogene Chr5:80892278-80993683 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0010132
polymorphic pseudogene Chr5:71224850-71325405 (+)
PWK/PhJ MGP_PWKPhJ_G0009583
polymorphic pseudogene Chr5:68438888-68539841 (+)
SPRET/EiJ MGP_SPRETEiJ_G0009414
polymorphic pseudogene Chr5:70592491-70711690 (+)
WSB/EiJ MGP_WSBEiJ_G0009766
polymorphic pseudogene Chr5:71470506-71571961 (+)



Homology
more
  • Human Ortholog
    ATP10D, ATPase phospholipid transporting 10D (putative)
  • Human Ortholog
    ATP10D, ATPase phospholipid transporting 10D (putative)
    Orthology source: HGNC
  • Synonyms
    ATPVD
  • Links
    NCBI Gene ID: 57205
    neXtProt AC: NX_Q9P241
    UniProt: Q9P241

  • Chr Location
    4p12; chr4:47485261-47593486 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    23 phenotype references
  • All Mutations and Alleles
    10
  • Chemically induced (other)
    2
  • Gene trapped
    5
  • Radiation induced
    1
  • Spontaneous
    2
  • Genomic Mutations
    4 involving Atp10d
  • Incidental Mutations
  • Find Mice (IMSR)
The C57BL/6J strain carries a spontaneous knockout mutation. Viability and fertility are unaffected.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 231287 NCBI Gene Model | MGI Sequence Detail 95443 C57BL/6J ±  kb
transcript NR_003966 RefSeq | MGI Sequence Detail 6048 C57BL/6  
polypeptide Q8K2X1 UniProt | EBI | MGI Sequence Detail 1416 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    Genomic 4
    cDNA 11
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:1343479, MGI:2444239
References
more
  • Summaries
    All 43
    Gene Ontology 1
    Phenotypes 23
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:245487 Sigruener A, et al., Lipidomic and metabolic changes in the P4-type ATPase ATP10D deficient C57BL/6J wild type mice upon rescue of ATP10D function. PLoS One. 2017;12(5):e0178368

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/10/2019
MGI 6.14
The Jackson Laboratory