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Cdv3 Gene Detail
Summary
  • Symbol
    Cdv3
  • Name
    carnitine deficiency-associated gene expressed in ventricle 3
  • Synonyms
    2510010F10Rik, C230084J24Rik, TPP36
  • Feature Type
    protein coding gene
  • IDs
    MGI:2448759
    NCBI Gene: 321022
  • Alliance
    gene page
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:103353102-103365835 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 55.26 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    59 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2448759
 protein coding gene Chr9:103353094-103365840 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035199
 protein coding gene Chr9:104970480-104981931 (-)
A/J MGP_AJ_G0035179
 protein coding gene Chr9:101194216-101203535 (-)
AKR/J MGP_AKRJ_G0035111
 protein coding gene Chr9:103695725-103715170 (-)
BALB/cJ MGP_BALBcJ_G0035172
 protein coding gene Chr9:100901868-100914228 (-)
C3H/HeJ MGP_C3HHeJ_G0034882
 protein coding gene Chr9:104087950-104097383 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035692
 protein coding gene Chr9:107893390-107904745 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032590
 protein coding gene Chr9:98780098-98783497 (-)
CAST/EiJ MGP_CASTEiJ_G0034194
 protein coding gene Chr9:103948406-103957584 (-)
CBA/J MGP_CBAJ_G0034851
 protein coding gene Chr9:111642436-111654321 (-)
DBA/2J MGP_DBA2J_G0035012
 protein coding gene Chr9:100685200-100694657 (-)
FVB/NJ MGP_FVBNJ_G0034960
 protein coding gene Chr9:99490006-99499978 (-)
LP/J MGP_LPJ_G0035088
 protein coding gene Chr9:105174750-105189883 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034999
 protein coding gene Chr9:113444281-113456012 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035714
 protein coding gene Chr9:103938674-103953749 (-)
PWK/PhJ MGP_PWKPhJ_G0033901
 protein coding gene Chr9:100944910-100955840 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033736
 protein coding gene Chr9:103997286-104006932 (-)
WSB/EiJ MGP_WSBEiJ_G0034314
 protein coding gene Chr9:103826661-103839664 (-)



Homology
more
  • Human Ortholog
    CDV3, CDV3 homolog
  • Vertebrate Orthologs
    11
  • Human Ortholog
    CDV3, CDV3 homolog
    Orthology source: HomoloGene, HGNC
  • Synonyms
    H41
  • Links
    NCBI Gene ID: 55573
    neXtProt AC: NX_Q9UKY7
    UniProt: Q9UKY7

  • Chr Location
    3q22.1; chr3:133573563-133590274 (+)  GRCh38.p7
  • HomoloGene
    Vertebrate Homology Class 133862
    1 human;2 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CDV3
  • Gene Tree
    Cdv3
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
    16
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 321022 NCBI Gene Model | MGI Sequence Detail 12734 C57BL/6J ±  kb
transcript NM_175565 RefSeq | MGI Sequence Detail 4051 C57BL/6  
polypeptide Q4VAA2 UniProt | EBI | MGI Sequence Detail 281 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 17
    cDNA 16
    Primer pair 1

    Microarray probesets 9
Other
Accession IDs
less
MGI:1924257, MGI:2143404
References
more
  • Summaries
    All 31
    Gene Ontology 2
    Phenotypes 7
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/04/2020
MGI 6.14 		The Jackson Laboratory