Cdv3 Gene Detail

Summary

• Symbol
  Cdv3
• Name
  carnitine deficiency-associated gene expressed in ventricle 3
• Synonyms
  2510010F10Rik, C230084J24Rik, TPP36

• Feature Type
  protein coding gene
• IDs
  MGI:2448759
  NCBI Gene: 321022

Location & Maps

• Sequence Map
  Chr9:103353094-103365840 bp, - strand
• From VEGA annotation of GRCm38
  

  Mouse Genome Browser
  
  

• Download
  Sequence
    12747 bp   ±  kb flank
  
  
• Genome Browsers
  VEGA | Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 55.26 cM
• Mapping Data
  3 experiments

Homology

• Human Ortholog
  CDV3, CDV3 homolog

• Vertebrate Orthologs
  11

• Human Ortholog
  CDV3, CDV3 homolog
  Orthology source: HomoloGene, HGNC
• Synonyms
  H41
• Links
  HGNC:26928

  NCBI Gene ID: 55573

  neXtProt AC: NX_Q9UKY7

  UniProt: Q9UKY7

  
  
• Chr Location
  3q22.1; chr3:133573563-133590274 (+)  GRCh38.p7

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• HomoloGene
  Vertebrate Homology Class 133862
  1 human;2 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  
• HCOP
  human homology predictions: CDV3
• Gene Tree
  Cdv3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  43
• Gene trapped
  41
• Targeted
  2
• Incidental Mutations
  APF , CvDC
• Find Mice (IMSR)
  15 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  2
• GO References
  1

• External Resources
  FuncBase

Expression

• cDNA Data
  15

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas
• Other Vertebrate Links
  Xenbase cdv3
  ZFIN cdv3

Interactions

• Cdv3 interacts with 355 markers (Mir1a-1, Mir1a-2, Mir7-2, ...) View All

Sequences &
Gene Models

• All Sequences
  68
• RefSeq
  12
• UniProt
  5
• CCDS
  CCDS23454.1, CCDS40748.1, CCDS52902.1, CCDS81064.1

• VEGA
  OTTMUSG00000048458 (Evidence)
• Ensembl
  ENSMUSG00000032803 (Evidence)
• NCBI Gene
  321022

Representative Sequences			Length	Strain/Species
genomic	OTTMUSG00000048458	VEGA Gene Model | MGI Sequence Detail	12747	C57BL/6J
transcript	OTTMUST00000124208	VEGA | MGI Sequence Detail	3387	Not Applicable
polypeptide	OTTMUSP00000067626	VEGA | MGI Sequence Detail	281	Not Applicable

Polymorphisms

• SNPs within 2kb
  60 from dbSNP Build 142

Protein
Information

• UniProt
  5 Sequences
• Protein Ontology
  PR:000005294 protein CDV3
  (term hierarchy)
• InterPro Domains
  IPR026806 Protein CDV3

Molecular
Reagents

• All nucleic 16

  cDNA 15

  Primer pair 1

  
  

  Microarray probesets 9

Other
Accession IDs

MGI:1924257, MGI:2143404

References

• Summaries
  All 30

  Gene Ontology 1

  Phenotypes 7
• Earliest
  J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582