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Samd4b
Gene Detail
Symbol

Name
ID
Samd4b
sterile alpha motif domain containing 4B
MGI:2448542
Feature Type
protein coding gene
Genetic Map
Chromosome 7
16.73 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr7:28399522-28436191 bp, - strand
From NCBI annotation of GRCm38

  36670 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:35268  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SAMD4B

Human
homologs
SAMD4B, sterile alpha motif domain containing 4B
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 55095
neXtProt AC: NX_Q5PRF9

Human Synonyms: Smaug2, SMGB

Human Chr (Location): 19q13.2; chr19:39342459-39390760 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(149) : Gene trapped(148) Targeted(1)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Samd4b interacts with 350 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cytoplasm
Function poly(A) RNA binding
External Resources: FuncBase
Expression
cDNA source data(61)
Other mouse links: Allen Institute   GEO  
Other vertebrate links: Xenbase samd4b    NEW 
Molecular
reagents
All nucleic(61) cDNA(61)
Microarray probesets(2)
Other database
links
Entrez Gene 233033 (Evidence)
UniGene 54120
DFCI TC1581844, TC1634091
DoTS DT.110998325, DT.532918
NIA Mouse Gene Index U028325
Consensus CDS Project CCDS21044.1
International Mouse Phenotyping Consortium Status Samd4b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 233033 NCBI Gene Model | MGI Sequence Detail 36670 C57BL/6J ±  kb
transcript NM_175021 RefSeq | MGI Sequence Detail 4391 C57BL/6 
polypeptide NP_778186 RefSeq | MGI Sequence Detail 687 C57BL/6 

For the selected sequences
All sequences(12) RefSeq(2)
Polymorphisms
SNPs within 2kb(90 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000029759 protein Smaug homolog 2
References
(Earliest) J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(26)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory