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Vps13d Gene Detail
Summary
  • Symbol
    Vps13d
  • Name
    vacuolar protein sorting 13D
  • Feature Type
    protein coding gene
  • IDs
    MGI:2448530
    NCBI Gene: 230895
  • Gene Overview
    MyGene.info: VPS13D
  • Alliance
Location & Maps
more
  • Sequence Map
    Chr4:144972622-145195005 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      222384 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 78.17 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    VPS13D, vacuolar protein sorting 13 homolog D
  • Vertebrate Orthologs
    9
  • Human Ortholog
    VPS13D, vacuolar protein sorting 13 homolog D
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 55187
    neXtProt AC: NX_Q5THJ4
    UniProt: Q5THJ4

  • Chr Location
    1p36.22-p36.21; chr1:12230039-12512047 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    15 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a transgenic gene disruption exhibit embryonic lethality at E7.
Gene Ontology
(GO)
Classifications
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Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000010745 VEGA Gene Model | MGI Sequence Detail 222384 C57BL/6J ±  kb
transcript OTTMUST00000025098 VEGA | MGI Sequence Detail 15849 Not Applicable  
polypeptide OTTMUSP00000011502 VEGA | MGI Sequence Detail 4390 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    1867 from dbSNP Build 142
Protein
Information
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  • UniProt
    6 Sequences
  • InterPro Domains
    IPR009060 UBA-like superfamily
    IPR015940 Ubiquitin-associated domain
    IPR026847 Vacuolar protein sorting-associated protein 13
    IPR031645 Vacuolar protein sorting-associated protein 13, C-terminal
    IPR026854 Vacuolar protein sorting-associated protein 13, N-terminal domain
    IPR031646 Vacuolar protein sorting-associated protein 13, second N-terminal domain
    IPR009543 Vacuolar protein sorting-associated protein 13, SHR-binding domain
    IPR031642 VPS13, repeated coiled region
Molecular
Reagents
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  • All nucleic 14
    cDNA 14

    Microarray probesets 7
Other
Accession IDs
less
MGI:2140701
References
more
  • Summaries
    All 34
    Phenotypes 15
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
01/09/2018
MGI 6.11
The Jackson Laboratory