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Wscd1 Gene Detail
Summary
  • Symbol
    Wscd1
  • Name
    WSC domain containing 1
  • Synonyms
    MGC:55022
  • Feature Type
    protein coding gene
  • IDs
    MGI:2448493
    NCBI Gene: 216881
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:71749920-71789647 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 43.62 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    261 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2448493
protein coding gene Chr11:71749893-71789649 (+)
129S1/SvImJ MGP_129S1SvImJ_G0018626
protein coding gene Chr11:72348255-72387960 (+)
A/J MGP_AJ_G0018594
protein coding gene Chr11:69646334-69686525 (+)
AKR/J MGP_AKRJ_G0018563
protein coding gene Chr11:71761685-71801388 (+)
BALB/cJ MGP_BALBcJ_G0018566
protein coding gene Chr11:69934637-69974804 (+)
C3H/HeJ MGP_C3HHeJ_G0018379
protein coding gene Chr11:71720041-71760827 (+)
C57BL/6NJ MGP_C57BL6NJ_G0019017
protein coding gene Chr11:74539703-74579428 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016660
protein coding gene Chr11:66492725-66532022 (+)
CAST/EiJ MGP_CASTEiJ_G0017934
protein coding gene Chr11:72081796-72149071 (+)
CBA/J MGP_CBAJ_G0018351
protein coding gene Chr11:77851391-77890879 (+)
DBA/2J MGP_DBA2J_G0018460
protein coding gene Chr11:69288511-69328718 (+)
FVB/NJ MGP_FVBNJ_G0018451
protein coding gene Chr11:68813627-68854185 (+)
LP/J MGP_LPJ_G0018531
protein coding gene Chr11:72860365-72901153 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0018474
protein coding gene Chr11:78448280-78488027 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0019059
protein coding gene Chr11:71971332-72012445 (+)
PWK/PhJ MGP_PWKPhJ_G0017707
protein coding gene Chr11:69901448-69965296 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017497
protein coding gene Chr11:71672555-71711957 (+)
WSB/EiJ MGP_WSBEiJ_G0017988
protein coding gene Chr11:71702493-71742815 (+)



Homology
more
  • Human Ortholog
    WSCD1, WSC domain containing 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    WSCD1, WSC domain containing 1
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 23302
    neXtProt AC: NX_Q658N2
    UniProt: Q658N2

  • Chr Location
    17p13.2; chr17:6069106-6124427 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 18590
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: WSCD1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000020811 Ensembl Gene Model | MGI Sequence Detail 39728 C57BL/6J ±  kb
transcript ENSMUST00000021168 Ensembl | MGI Sequence Detail 2757 Not Applicable  
polypeptide ENSMUSP00000021168 Ensembl | MGI Sequence Detail 572 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 26
    cDNA 26

    Microarray probesets 4
References
more
  • Summaries
    All 39
    Developmental Gene Expression 5
    Gene Ontology 2
    Phenotypes 12
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:228563 Koscielny G, et al., The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Nucleic Acids Res. 2014 Jan;42(Database issue):D802-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
05/26/2020
MGI 6.15
The Jackson Laboratory