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Kdm6b Gene Detail
Summary
  • Symbol
    Kdm6b
  • Name
    KDM1 lysine (K)-specific demethylase 6B
  • Synonyms
    Jmjd3, mKIAA0346
  • Feature Type
    protein coding gene
  • IDs
    MGI:2448492
    NCBI Gene: 216850
  • Alliance
    gene page
  • Transcription Start Sites
    16 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:69398508-69413675 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 42.60 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    78 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2448492
 protein coding gene Chr11:69398508-69418147 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018534
 protein coding gene Chr11:69827087-69844213 (-)
A/J MGP_AJ_G0018502
 protein coding gene Chr11:67200038-67215214 (-)
AKR/J MGP_AKRJ_G0018471
 protein coding gene Chr11:69211532-69221129 (-)
BALB/cJ MGP_BALBcJ_G0018474
 protein coding gene Chr11:67519041-67534202 (-)
C3H/HeJ MGP_C3HHeJ_G0018287
 protein coding gene Chr11:69228511-69244945 (-)
C57BL/6NJ MGP_C57BL6NJ_G0018925
 protein coding gene Chr11:71941015-71957862 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016570
 protein coding gene Chr11:64128899-64143763 (-)
CAST/EiJ MGP_CASTEiJ_G0017842
 protein coding gene Chr11:69464461-69487270 (-)
CBA/J MGP_CBAJ_G0018260
 protein coding gene Chr11:75163302-75180480 (-)
DBA/2J MGP_DBA2J_G0018369
 protein coding gene Chr11:66790963-66805457 (-)
FVB/NJ MGP_FVBNJ_G0018359
 protein coding gene Chr11:66417892-66435294 (-)
LP/J MGP_LPJ_G0018439
 protein coding gene Chr11:70398518-70414702 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0018382
 protein coding gene Chr11:75776100-75801729 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0018967
 protein coding gene Chr11:69461906-69478102 (-)
PWK/PhJ MGP_PWKPhJ_G0017616
 protein coding gene Chr11:67434074-67456928 (-)
SPRET/EiJ MGP_SPRETEiJ_G0017406
 protein coding gene Chr11:69281359-69298787 (-)
WSB/EiJ MGP_WSBEiJ_G0017896
 protein coding gene Chr11:69138567-69159234 (-)



Homology
more
  • Human Ortholog
    KDM6B, lysine demethylase 6B
  • Vertebrate Orthologs
    7
  • Human Ortholog
    KDM6B, lysine demethylase 6B
    Orthology source: HomoloGene, HGNC
  • Synonyms
    JMJD3
  • Links
    NCBI Gene ID: 23135
    neXtProt AC: NX_O15054
    UniProt: O15054

  • Chr Location
    17p13.1; chr17:7834210-7854800 (+)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    38 phenotypes from 8 alleles in 6 genetic backgrounds
    2 phenotypes from multigenic genotypes
    1 images
    28 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele show perinatal death, thick alveolar septum, and absence of air space in the lungs. Mice homozygous for a different null allele die neonatally displaying abnormal lung development, dwarfism, kyphosis, short limbs, and a severe delay in endochondral ossification.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    44
  • GO References
    12
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • Assay Results
    1
  • Tissues
    1
  • cDNA Data
    8
  • Literature Summary
    15
  • Comparison Matrix
    Gene Expression + Phenotype
    • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000018476 Ensembl Gene Model | MGI Sequence Detail 15168 C57BL/6J ±  kb
    transcript ENSMUST00000094077 Ensembl | MGI Sequence Detail 6654 Not Applicable  
    polypeptide ENSMUSP00000091620 Ensembl | MGI Sequence Detail 1641 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 9
      cDNA 8
      Other 1

      Microarray probesets 4
    References
    more
    • Summaries
      All 90
      Developmental Gene Expression 15
      Gene Ontology 12
      Phenotypes 28
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:266522 Elsen GE, et al., The Epigenetic Factor Landscape of Developing Neocortex Is Regulated by Transcription Factors Pax6--> Tbr2--> Tbr1. Front Neurosci. 2018;12:571
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    01/15/2019
    MGI 6.13     		The Jackson Laboratory