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H3c3 Gene Detail
Summary
  • Symbol
    H3c3
  • Name
    H3 clustered histone 3
  • Synonyms
    H3-143, Hist1h3c
  • Feature Type
    protein coding gene
  • IDs
    MGI:2448320
    NCBI Gene: 319148
  • Member of
    Hist1 cluster
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:23929025-23929504 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 9.90 cM, cytoband A2-A3
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    38 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2448320
protein coding gene Chr13:23928956-23929585 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020345
protein coding gene Chr13:20946659-20957686 (+)
A/J MGP_AJ_G0027575
protein coding gene Chr3:94034199-94034741 (+)
AKR/J MGP_AKRJ_G0027543
protein coding gene Chr3:96241227-96241769 (+)
BALB/cJ MGP_BALBcJ_G0020308
protein coding gene Chr13:20787010-20787498 (-)
C3H/HeJ MGP_C3HHeJ_G0020113
protein coding gene Chr13:21120959-21121447 (-)
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0018332
protein coding gene Chr13:19572670-19573160 (-)
CAST/EiJ MGP_CASTEiJ_G0019630
protein coding gene Chr13:20805498-20805812 (-)
CBA/J MGP_CBAJ_G0020065
protein coding gene Chr13:22820838-22821656 (-)
DBA/2J MGP_DBA2J_G0020192
protein coding gene Chr13:20326058-20326787 (-)
FVB/NJ no annotation
LP/J MGP_LPJ_G0020252
protein coding gene Chr13:21304755-21306879 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020204
protein coding gene Chr13:23114484-23114972 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020786
protein coding gene Chr13:20902009-20903222 (-)
PWK/PhJ MGP_PWKPhJ_G0019384
protein coding gene Chr13:20353815-20356279 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019200
protein coding gene Chr13:19704416-19705854 (-)
WSB/EiJ MGP_WSBEiJ_G0019688
protein coding gene Chr13:21041731-21042226 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving H3c3
  • Incidental Mutations
  • Find Mice (IMSR)
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 319148 NCBI Gene Model | MGI Sequence Detail 480 C57BL/6J ±  kb
transcript NM_175653 RefSeq | MGI Sequence Detail 480 C57BL/6  
polypeptide P84228 UniProt | EBI | MGI Sequence Detail 136 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 7
    Genomic 1
    cDNA 6
References
more
  • Summaries
    All 22
    Developmental Gene Expression 1
    Phenotypes 8
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:277247 Vetrivel S, et al., Mutation in the mouse histone gene Hist2h3c1 leads to degeneration of the lens vesicle and severe microphthalmia. Exp Eye Res. 2019 Apr 13;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/14/2021
MGI 6.17
The Jackson Laboratory