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Hist1h2af Gene Detail
Summary
  • Symbol
    Hist1h2af
  • Name
    histone cluster 1, H2af
  • Synonyms
    H2a-221
  • Feature Type
    protein coding gene
  • IDs
    MGI:2448309
    NCBI Gene: 319173
  • Member of
    Hist1 cluster
  • Gene Overview
    MyGene.info: HIST1H2AJ
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:23533906-23534304 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 9.77 cM, cytoband A2-A3
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    28 from dbSNP Build 142
  • Strain Annotations
    9
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2448309
protein coding gene Chr13:23533906-23534378 (.)
129S1/SvImJ MGP_129S1SvImJ_G0027611
protein coding gene Chr3:97027223-97027689 (-)
A/J no annotation
AKR/J MGP_AKRJ_G0020274
protein coding gene Chr13:20814756-20815183 (+)
BALB/cJ MGP_BALBcJ_G0020288
protein coding gene Chr13:20561286-20561793 (+)
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0025370
protein coding gene Chr3:90306821-90307287 (-)
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0020763
protein coding gene Chr13:20671539-20671937 (+)
PWK/PhJ MGP_PWKPhJ_G0026494
protein coding gene Chr3:93172184-93172720 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026315
protein coding gene Chr3:94121330-94121796 (-)
WSB/EiJ MGP_WSBEiJ_G0026847
protein coding gene Chr3:96215610-96216076 (-)



Homology
more
  • Human Ortholog
    HIST1H2AJ, histone cluster 1 H2A family member j
  • Vertebrate Orthologs
    6
  • Human Ortholog
    HIST1H2AJ, histone cluster 1 H2A family member j
    Orthology source: HomoloGene
  • Synonyms
    dJ160A22.4, H2A/E, H2AFE
  • Links
    NCBI Gene ID: 8331
    neXtProt AC: NX_Q99878

  • Chr Location
    6p22.1; chr6:27814302-27814740 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Hist1h2af
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000061991 Ensembl Gene Model | MGI Sequence Detail 399 C57BL/6J ±  kb
transcript ENSMUST00000073261 Ensembl | MGI Sequence Detail 399 Not Applicable  
polypeptide ENSMUSP00000072989 Ensembl | MGI Sequence Detail 130 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 2
    Genomic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 26
    Gene Ontology 4
    Phenotypes 8
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory