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Hist1h2ab Gene Detail
Summary
  • Symbol
    Hist1h2ab
  • Name
    histone cluster 1, H2ab
  • Synonyms
    H2A.1, H2a-53
  • Feature Type
    protein coding gene
  • IDs
    MGI:2448306
    NCBI Gene: 319172
  • Member of
    Hist1 cluster
  • Gene Overview
    MyGene.info: HIST1H2AD
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:23751126-23751598 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 9.91 cM, cytoband A2-A3
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    55 from dbSNP Build 142
  • Strain Annotations
    13
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2448306
protein coding gene Chr13:23751088-23751598 (.)
129S1/SvImJ MGP_129S1SvImJ_G0020362
protein coding gene Chr13:21194015-21195571 (+)
A/J no annotation
AKR/J MGP_AKRJ_G0020292
protein coding gene Chr13:21057935-21058284 (+)
BALB/cJ MGP_BALBcJ_G0020309
protein coding gene Chr13:20793114-20793586 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0020747
protein coding gene Chr13:21974258-21974730 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018334
protein coding gene Chr13:19578680-19579129 (+)
CAST/EiJ MGP_CASTEiJ_G0019632
protein coding gene Chr13:20810536-20811485 (+)
CBA/J MGP_CBAJ_G0020068
protein coding gene Chr13:22827272-22827705 (+)
DBA/2J MGP_DBA2J_G0020193
protein coding gene Chr13:20332417-20332903 (+)
FVB/NJ MGP_FVBNJ_G0020177
protein coding gene Chr13:19982614-19983415 (+)
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0020788
protein coding gene Chr13:20909730-20910202 (+)
PWK/PhJ MGP_PWKPhJ_G0019386
protein coding gene Chr13:20360464-20361037 (+)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0019690
protein coding gene Chr13:21047844-21048303 (+)



Homology
more
  • Human Ortholog
    HIST1H2AD, histone cluster 1 H2A family member d
  • Vertebrate Orthologs
    6
  • Human Ortholog
    HIST1H2AD, histone cluster 1 H2A family member d
    Orthology source: HomoloGene
  • Synonyms
    H2A.3, H2AFG, H2A/g
  • Links
    NCBI Gene ID: 3013
    neXtProt AC: NX_P20671
    UniProt: P20671

  • Chr Location
    6p22.2; chr6:26198784-26199293 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Hist1h2ab
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000061615 Ensembl Gene Model | MGI Sequence Detail 473 C57BL/6J ±  kb
transcript ENSMUST00000078369 Ensembl | MGI Sequence Detail 473 Not Applicable  
polypeptide ENSMUSP00000077477 Ensembl | MGI Sequence Detail 130 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    Genomic 1
    cDNA 2

    Microarray probesets 2
References
more
  • Summaries
    All 23
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 8
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:256001 Jung EM, et al., Arid1b haploinsufficiency disrupts cortical interneuron development and mouse behavior. Nat Neurosci. 2017 Dec;20(12):1694-1707

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory