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Hist1h2aa Gene Detail
Summary
  • Symbol
    Hist1h2aa
  • Name
    histone cluster 1, H2aa
  • Feature Type
    protein coding gene
  • IDs
    MGI:2448285
    NCBI Gene: 319163
  • Member of
    Hist1 cluster
  • Gene Overview
    MyGene.info: HIST1H2AA
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:23934462-23934851 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 10.00 cM, cytoband A2-A3
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    21 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2448285
protein coding gene Chr13:23934462-23934913 (.)
129S1/SvImJ MGP_129S1SvImJ_G0020374
protein coding gene Chr13:21385125-21385514 (+)
A/J MGP_AJ_G0020323
protein coding gene Chr13:20990654-20991043 (+)
AKR/J MGP_AKRJ_G0020303
protein coding gene Chr13:21246771-21247160 (+)
BALB/cJ MGP_BALBcJ_G0020321
protein coding gene Chr13:20985791-20986180 (+)
C3H/HeJ MGP_C3HHeJ_G0020125
protein coding gene Chr13:21317660-21318049 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020758
protein coding gene Chr13:22167981-22168370 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018346
protein coding gene Chr13:19763416-19763805 (+)
CAST/EiJ MGP_CASTEiJ_G0019642
protein coding gene Chr13:21003953-21004342 (+)
CBA/J MGP_CBAJ_G0020079
protein coding gene Chr13:23023727-23024116 (+)
DBA/2J MGP_DBA2J_G0020205
protein coding gene Chr13:20515666-20516055 (+)
FVB/NJ MGP_FVBNJ_G0020189
protein coding gene Chr13:20167111-20167500 (+)
LP/J MGP_LPJ_G0020278
protein coding gene Chr13:21694402-21694791 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020216
protein coding gene Chr13:23316884-23317273 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020800
protein coding gene Chr13:21094732-21095121 (+)
PWK/PhJ MGP_PWKPhJ_G0019396
protein coding gene Chr13:20556948-20557275 (+)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0019702
protein coding gene Chr13:21240813-21241202 (+)



Homology
more
  • Human Ortholog
    HIST1H2AA, histone cluster 1 H2A family member a
  • Vertebrate Orthologs
    1
  • Human Ortholog
    HIST1H2AA, histone cluster 1 H2A family member a
    Orthology source: HGNC
  • Synonyms
    bA317E16.2, H2AA, H2AFR, TH2A
  • Links
    NCBI Gene ID: 221613
    neXtProt AC: NX_Q96QV6
    UniProt: Q96QV6

  • Chr Location
    6p22.2; chr6:25726063-25726562 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000060081 Ensembl Gene Model | MGI Sequence Detail 390 C57BL/6J ±  kb
transcript ENSMUST00000072391 Ensembl | MGI Sequence Detail 390 Not Applicable  
polypeptide ENSMUSP00000072227 Ensembl | MGI Sequence Detail 129 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 3
    Genomic 1
    cDNA 2

    Microarray probesets 1
References
more
  • Summaries
    All 22
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 10
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:238879 Shinagawa T, et al., Disruption of Th2a and Th2b genes causes defects in spermatogenesis. Development. 2015 Apr 01;142(7):1287-92

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory