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Hist2h2aa2 Gene Detail
Summary
  • Symbol
    Hist2h2aa2
  • Name
    histone cluster 2, H2aa2
  • Synonyms
    H2a-614
  • Feature Type
    protein coding gene
  • IDs
    MGI:2448283
    NCBI Gene: 319192
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr3:96239749-96240276 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 41.69 cM, cytoband F1-F2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2 from dbSNP Build 142
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2448283
protein coding gene Chr3:96239749-96240374 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0027572
protein coding gene Chr3:94000608-94006702 (-)
AKR/J MGP_AKRJ_G0027539
protein coding gene Chr3:96212426-96212939 (+)
BALB/cJ MGP_BALBcJ_G0027583
protein coding gene Chr3:93781177-93781666 (-)
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0026767
protein coding gene Chr3:95812408-95812935 (+)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0027433
protein coding gene Chr3:93304828-93305932 (-)
FVB/NJ MGP_FVBNJ_G0027404
protein coding gene Chr3:91367516-91368043 (-)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0027430
protein coding gene Chr3:110388351-110388895 (-)
NZO/HlLtJ no annotation
PWK/PhJ MGP_PWKPhJ_G0026497
protein coding gene Chr3:93198132-93199169 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026318
protein coding gene Chr3:94140719-94141246 (-)
WSB/EiJ MGP_WSBEiJ_G0026850
protein coding gene Chr3:96236068-96238009 (-)



Homology
more
  • Human Ortholog
    HIST2H2AA3, histone cluster 2 H2A family member a3
  • Vertebrate Orthologs
    9
  • Human Ortholog
    HIST2H2AA3, histone cluster 2 H2A family member a3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    H2A, H2A.2, H2a-615, H2AFO, H2A/O, H2A/q, HIST2H2AA
  • Links
    NCBI Gene ID: 8337
    neXtProt AC: NX_Q6FI13
    UniProt: Q6FI13

  • Chr Location
    1q21.2; chr1:149842218-149842751 (-)  GRCh38.p7

  • Human Ortholog
    HIST2H2AA4, histone cluster 2 H2A family member a4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    H2A/R
  • Links
    NCBI Gene ID: 723790
    neXtProt AC: NX_Q6FI13
    UniProt: Q6FI13

  • Chr Location
    1q21.2; chr1:149851061-149851594 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Hist2h2aa2
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000063954 Ensembl Gene Model | MGI Sequence Detail 528 C57BL/6J ±  kb
transcript ENSMUST00000074976 Ensembl | MGI Sequence Detail 528 Not Applicable  
polypeptide ENSMUSP00000100581 Ensembl | MGI Sequence Detail 130 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 1
References
more
  • Summaries
    All 18
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:19916 Moss SB, et al., An alternative pathway of histone mRNA 3' end formation in mouse round spermatids. Nucleic Acids Res. 1994 Aug 11;22(15):3160-6
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory