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Rpl17 Gene Detail
Summary
  • Symbol
    Rpl17
  • Name
    ribosomal protein L17
  • Feature Type
    protein coding gene
  • IDs
    MGI:2448270
    NCBI Gene: 319195
  • Gene Overview
    MyGene.info: RPL17
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:75000477-75003381 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 50.96 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    131 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2448270
protein coding gene Chr18:74998978-75003381 (.)
129S1/SvImJ MGP_129S1SvImJ_G0024561
protein coding gene Chr18:75677101-75680009 (+)
A/J MGP_AJ_G0024528
protein coding gene Chr18:72364148-72366892 (+)
AKR/J MGP_AKRJ_G0024499
protein coding gene Chr18:74523922-74526847 (+)
BALB/cJ MGP_BALBcJ_G0024528
protein coding gene Chr18:72562357-72565637 (+)
C3H/HeJ MGP_C3HHeJ_G0024296
protein coding gene Chr18:74617460-74620365 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024974
protein coding gene Chr18:77654838-77657742 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022404
protein coding gene Chr18:71422451-71425528 (+)
CAST/EiJ MGP_CASTEiJ_G0023769
protein coding gene Chr18:74791763-74795924 (+)
CBA/J MGP_CBAJ_G0024265
protein coding gene Chr18:80317173-80319599 (+)
DBA/2J MGP_DBA2J_G0024395
protein coding gene Chr18:71959512-71962417 (+)
FVB/NJ MGP_FVBNJ_G0024361
protein coding gene Chr18:71299028-71301433 (+)
LP/J MGP_LPJ_G0024479
protein coding gene Chr18:75527793-75537665 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024391
protein coding gene Chr18:81746863-81750757 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025022
protein coding gene Chr18:74659827-74662593 (+)
PWK/PhJ MGP_PWKPhJ_G0023513
protein coding gene Chr18:72330534-72333592 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023317
protein coding gene Chr18:74786564-74789396 (+)
WSB/EiJ MGP_WSBEiJ_G0023832
protein coding gene Chr18:74594532-74597435 (+)



Homology
more
  • Human Ortholog
    RPL17, ribosomal protein L17
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RPL17, ribosomal protein L17
    Orthology source: HomoloGene, HGNC
  • Synonyms
    L17, PD-1, RPL23
  • Links
    NCBI Gene ID: 6139
    neXtProt AC: NX_P18621
    UniProt: P18621

  • Chr Location
    18q21.1; chr18:49488481-49492565 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000062328 Ensembl Gene Model | MGI Sequence Detail 2905 C57BL/6J ±  kb
transcript ENSMUST00000079716 Ensembl | MGI Sequence Detail 775 Not Applicable  
polypeptide ENSMUSP00000078654 Ensembl | MGI Sequence Detail 184 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    5 Sequences
  • InterPro Domains
    IPR001063 Ribosomal protein L22/L17
    IPR018260 Ribosomal protein L22/L17, conserved site
    IPR005721 Ribosomal protein L22/L17, eukaryotic/archaeal
    IPR036394 Ribosomal protein L22/L17 superfamily
Molecular
Reagents
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  • All nucleic 554
    cDNA 554

    Microarray probesets 17
References
more
  • Summaries
    All 33
    Developmental Gene Expression 5
    Gene Ontology 7
    Phenotypes 4
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:239387 Stafford DA, et al., Deletion of the sclerotome-enriched lncRNA PEAT augments ribosomal protein expression. Proc Natl Acad Sci U S A. 2017 Jan 03;114(1):101-106

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory