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Sec22a Gene Detail
Summary
  • Symbol
    Sec22a
  • Name
    SEC22 homolog A, vesicle trafficking protein
  • Synonyms
    1810005C06Rik, Sec22l2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2447876
    NCBI Gene: 317717
  • Gene Overview
    MyGene.info: SEC22A
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:35311131-35363918 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 25.21 cM, cytoband B3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    294 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2447876
protein coding gene Chr16:35311131-35363936 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022767
protein coding gene Chr16:33616374-33669225 (-)
A/J MGP_AJ_G0022732
protein coding gene Chr16:31989135-32041114 (-)
AKR/J MGP_AKRJ_G0022705
protein coding gene Chr16:33107226-33160201 (-)
BALB/cJ MGP_BALBcJ_G0022734
protein coding gene Chr16:32120256-32174071 (-)
C3H/HeJ MGP_C3HHeJ_G0022499
protein coding gene Chr16:33255582-33308740 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023183
protein coding gene Chr16:34342733-34399598 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020701
protein coding gene Chr16:32355986-32407919 (-)
CAST/EiJ MGP_CASTEiJ_G0022027
protein coding gene Chr16:33463911-33519983 (-)
CBA/J MGP_CBAJ_G0022469
protein coding gene Chr16:35749460-35801547 (-)
DBA/2J MGP_DBA2J_G0022602
protein coding gene Chr16:31819908-31873035 (-)
FVB/NJ MGP_FVBNJ_G0022577
protein coding gene Chr16:31819439-31873921 (-)
LP/J MGP_LPJ_G0022669
protein coding gene Chr16:33342341-33396682 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022596
protein coding gene Chr16:35028218-35083767 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023195
protein coding gene Chr16:33158068-33214127 (-)
PWK/PhJ MGP_PWKPhJ_G0021768
protein coding gene Chr16:32216323-32270291 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021599
protein coding gene Chr16:32962292-33019155 (-)
WSB/EiJ MGP_WSBEiJ_G0022071
protein coding gene Chr16:33096299-33151799 (-)



Homology
more
  • Human Ortholog
    SEC22A, SEC22 homolog A, vesicle trafficking protein
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SEC22A, SEC22 homolog A, vesicle trafficking protein
    Orthology source: HomoloGene, HGNC
  • Synonyms
    SEC22L2
  • Links
    NCBI Gene ID: 26984
    neXtProt AC: NX_Q96IW7
    UniProt: Q96IW7

  • Chr Location
    3q21.1; chr3:123201927-123274136 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000034473 Ensembl Gene Model | MGI Sequence Detail 52788 C57BL/6J ±  kb
transcript ENSMUST00000043521 Ensembl | MGI Sequence Detail 3992 Not Applicable  
polypeptide ENSMUSP00000039568 Ensembl | MGI Sequence Detail 307 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 56
    cDNA 56

    Microarray probesets 4
Other
Accession IDs
less
MGI:1916271
References
more
  • Summaries
    All 27
    Gene Ontology 2
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory