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Sec22c Gene Detail
Summary
  • Symbol
    Sec22c
  • Name
    SEC22 homolog C, vesicle trafficking protein
  • Synonyms
    5930407I15Rik, Sec22l3
  • Feature Type
    protein coding gene
  • IDs
    MGI:2447871
    NCBI Gene: 215474
Location & Maps
more
  • Sequence Map
    Chr9:121683022-121705490 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      22469 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 72.54 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    SEC22C, SEC22 homolog C, vesicle trafficking protein
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SEC22C, SEC22 homolog C, vesicle trafficking protein
    Orthology source: HGNC, HomoloGene
  • Synonyms
    SEC22L3
  • Links
    NCBI Gene ID: 9117
    neXtProt AC: NX_Q9BRL7

  • Chr Location
    3p22.1; chr3:42547967-42601080 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000027438 VEGA Gene Model | MGI Sequence Detail 22469 C57BL/6J ±  kb
transcript OTTMUST00000067889 VEGA | MGI Sequence Detail 3242 Not Applicable  
polypeptide OTTMUSP00000034229 VEGA | MGI Sequence Detail 303 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    251 from dbSNP Build 142
Protein
Information
less
  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000014585 vesicle-trafficking protein SEC22c
  • InterPro Domains
    IPR010908 Longin domain
    IPR011012 Longin-like domain
Molecular
Reagents
less
  • All nucleic 44
    cDNA 44

    Microarray probesets 4
Other
Accession IDs
less
MGI:2444875
References
more
  • Summaries
    All 23
    Gene Ontology 3
    Phenotypes 2
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory