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5330439B14Rik Gene Detail
Summary
  • Symbol
    5330439B14Rik
  • Name
    RIKEN cDNA 5330439B14 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2447824
    NCBI Gene: 321015
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr6:142560321-142572188 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 74.42 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    245 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2447824
lncRNA gene Chr6:142560321-142572188 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004384
antisense lncRNA gene Chr6:147414875-147426730 (+)
A/J MGP_AJ_G0004361
antisense lncRNA gene Chr6:141621700-141633555 (+)
AKR/J MGP_AKRJ_G0004343
antisense lncRNA gene Chr6:145840891-145852744 (+)
BALB/cJ MGP_BALBcJ_G0004347
antisense lncRNA gene Chr6:141395132-141406987 (+)
C3H/HeJ MGP_C3HHeJ_G0004296
antisense lncRNA gene Chr6:145879481-145891336 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004497
antisense lncRNA gene Chr6:151461864-151473719 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003957
antisense lncRNA gene Chr6:140453002-140466589 (+)
CAST/EiJ MGP_CASTEiJ_G0004256
antisense lncRNA gene Chr6:145447499-145459654 (+)
CBA/J MGP_CBAJ_G0004290
antisense lncRNA gene Chr6:157222940-157234793 (+)
DBA/2J MGP_DBA2J_G0004305
antisense lncRNA gene Chr6:140436813-140448652 (+)
FVB/NJ MGP_FVBNJ_G0004322
antisense lncRNA gene Chr6:139205442-139217231 (+)
LP/J MGP_LPJ_G0004384
antisense lncRNA gene Chr6:147553136-147566469 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004313
antisense lncRNA gene Chr6:161108098-161119971 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0004494
antisense lncRNA gene Chr6:145668304-145680143 (+)
PWK/PhJ MGP_PWKPhJ_G0004209
antisense lncRNA gene Chr6:138934575-138946471 (+)
SPRET/EiJ MGP_SPRETEiJ_G0004151
antisense lncRNA gene Chr6:143849208-143860955 (+)
WSB/EiJ MGP_WSBEiJ_G0004295
antisense lncRNA gene Chr6:146281766-146294433 (+)



Homology
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Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype reference
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 321015 NCBI Gene Model | MGI Sequence Detail 11868 C57BL/6J ±  kb
transcript NR_037679 RefSeq | MGI Sequence Detail 1392 C57BL/6  
polypeptide Q9D2A3 UniProt | EBI | MGI Sequence Detail 103 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
Molecular
Reagents
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  • All nucleic 5
    Genomic 2
    cDNA 3

    Microarray probesets 2
References
more
  • Summaries
    All 12
    Phenotypes 1
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
11/22/2022
MGI 6.22
The Jackson Laboratory