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Serac1
Gene Detail
Symbol

Name
ID
Serac1
serine active site containing 1
MGI:2447813
Synonyms
4930511N22Rik, D17Ertd141e
Feature Type
protein coding gene
Genetic Map
Chromosome 17
3.67 cM
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr17:6040718-6079741 bp, - strand
From VEGA annotation of GRCm38

  39024 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:41900  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SERAC1
Gene Tree: Serac1

Human
homologs
SERAC1, serine active site containing 1
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 84947
neXtProt AC: NX_Q96JX3

Human Chr (Location): 6q25.3; chr6:158109504-158168280 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human SERAC1

Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(3) Targeted(3)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Serac1 interacts with 249 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process extracellular matrix organization, GPI anchor metabolic process, ...
Component cytoplasm, endoplasmic reticulum, ...
Function hydrolase activity, acting on ester bonds
External Resources: FuncBase
Expression
cDNA source data(27)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase serac1    NEW 
Molecular
reagents
All nucleic(29) cDNA(27) Primer pair(1) Other(1)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000024050 (Evidence)
Ensembl Gene Model ENSMUSG00000015659 (Evidence)
Entrez Gene 321007 (Evidence)
UniGene 5548
DFCI TC1585807, TC1635067, TC1587824
DoTS DT.55155924, DT.40183968, DT.101373711
NIA Mouse Gene Index U017436
Consensus CDS Project CCDS28366.1, CCDS49933.1
International Mouse Phenotyping Consortium Status Serac1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024050 VEGA Gene Model | MGI Sequence Detail 39024 C57BL/6J ±  kb
transcript OTTMUST00000058801 VEGA | MGI Sequence Detail 4007 Not Applicable 
polypeptide OTTMUSP00000028540 VEGA | MGI Sequence Detail 654 Not Applicable 

For the selected sequences
All sequences(52) RefSeq(13) UniProt(1)
Polymorphisms
SNPs within 2kb(190 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR011989 Armadillo-like helical
InterPro IPR016024 Armadillo-type fold
InterPro IPR012908 GPI inositol-deacylase PGAP1-like
Protein Ontology PR:000014664 protein SERAC1
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(35)
Other
accession IDs
MGI:1098532

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/20/2015
MGI 5.22
The Jackson Laboratory