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Als2cl Gene Detail
Summary
  • Symbol
    Als2cl
  • Name
    ALS2 C-terminal like
  • Synonyms
    D930044G19Rik, mRn.49018
  • Feature Type
    protein coding gene
  • IDs
    MGI:2447532
    NCBI Gene: 235633
Location & Maps
more
  • Sequence Map
    Chr9:110879870-110900530 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      20661 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 60.79 cM
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    ALS2CL, ALS2 C-terminal like
  • Vertebrate Orthologs
    8
  • Human Ortholog
    ALS2CL, ALS2 C-terminal like
    Orthology source: HGNC, HomoloGene
  • Synonyms
    RN49018
  • Links
    NCBI Gene ID: 259173
    neXtProt AC: NX_Q60I27

  • Chr Location
    3p21.31; chr3:46668995-46693704 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    18 phenotype references
  • All Mutations and Alleles
    11
  • Gene trapped
    7
  • Spontaneous
    2
  • Targeted
    2
  • Genomic Mutations
    2 involving Als2cl
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000025999 VEGA Gene Model | MGI Sequence Detail 20661 C57BL/6J ±  kb
transcript OTTMUST00000064143 VEGA | MGI Sequence Detail 5079 Not Applicable  
polypeptide OTTMUSP00000031815 VEGA | MGI Sequence Detail 952 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    193 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 41
    cDNA 41

    Microarray probesets 3
Other
Accession IDs
less
MGI:2442331
References
more
  • Summaries
    All 30
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 18
  • Earliest
    J:78124 Mitchem KL, et al., Mutation of the novel gene Tmie results in sensory cell defects in the inner ear of spinner, a mouse model of human hearing loss DFNB6. Hum Mol Genet. 2002 Aug 1;11(16):1887-98
  • Latest
    J:190524 Shalom-Barak T, et al., Placental PPARgamma regulates spatiotemporally diverse genes and a unique metabolic network. Dev Biol. 2012 Dec 1;372(1):143-55

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory