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Als2cl Gene Detail
Summary
  • Symbol
    Als2cl
  • Name
    ALS2 C-terminal like
  • Synonyms
    D930044G19Rik, mRn.49018
  • Feature Type
    protein coding gene
  • IDs
    MGI:2447532
    NCBI Gene: 235633
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:110880135-110900530 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 60.79 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    193 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2447532
protein coding gene Chr9:110879870-110900530 (.)
129S1/SvImJ MGP_129S1SvImJ_G0035363
protein coding gene Chr9:113071446-113092114 (+)
A/J MGP_AJ_G0035344
protein coding gene Chr9:108943920-108964588 (+)
AKR/J MGP_AKRJ_G0035275
protein coding gene Chr9:111651660-111672328 (+)
BALB/cJ MGP_BALBcJ_G0035339
protein coding gene Chr9:108704320-108725725 (+)
C3H/HeJ MGP_C3HHeJ_G0035047
protein coding gene Chr9:112161218-112183308 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035861
protein coding gene Chr9:116168446-116190354 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032747
protein coding gene Chr9:106163409-106184179 (+)
CAST/EiJ MGP_CASTEiJ_G0034353
protein coding gene Chr9:111954079-111979306 (+)
CBA/J MGP_CBAJ_G0035014
protein coding gene Chr9:120466515-120493585 (+)
DBA/2J MGP_DBA2J_G0035173
protein coding gene Chr9:108406287-108426955 (+)
FVB/NJ MGP_FVBNJ_G0035120
protein coding gene Chr9:107245100-107265771 (+)
LP/J MGP_LPJ_G0035252
protein coding gene Chr9:113360519-113381197 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035160
protein coding gene Chr9:121782539-121803205 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035881
protein coding gene Chr9:112001073-112022344 (+)
PWK/PhJ MGP_PWKPhJ_G0034060
protein coding gene Chr9:108655358-108676594 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033895
protein coding gene Chr9:112080909-112104311 (+)
WSB/EiJ MGP_WSBEiJ_G0034474
protein coding gene Chr9:111870993-111893069 (+)



Homology
more
  • Human Ortholog
    ALS2CL, ALS2 C-terminal like
  • Vertebrate Orthologs
    8
  • Human Ortholog
    ALS2CL, ALS2 C-terminal like
    Orthology source: HGNC, HomoloGene
  • Synonyms
    RN49018
  • Links
    NCBI Gene ID: 259173
    neXtProt AC: NX_Q60I27
    UniProt: Q60I27

  • Chr Location
    3p21.31; chr3:46668995-46693713 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    19 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 235633 NCBI Gene Model | MGI Sequence Detail 20396 C57BL/6J ±  kb
transcript NM_001146060 RefSeq | MGI Sequence Detail 5186 C57BL/6  
polypeptide Q60I26 UniProt | EBI | MGI Sequence Detail 952 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 42
    cDNA 42

    Microarray probesets 3
Other
Accession IDs
less
MGI:2442331
References
more
  • Summaries
    All 43
    Developmental Gene Expression 2
    Gene Ontology 4
    Phenotypes 19
  • Earliest
    J:13132 DEOL MS, et al., The spinner mouse. J Hered. 1962 May-Jun;53:133-6
  • Latest
    J:239907 Fulcoli FG, et al., Rebalancing gene haploinsufficiency in vivo by targeting chromatin. Nat Commun. 2016 Jun 03;7:11688

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/04/2018
MGI 6.13
The Jackson Laboratory