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Cmtm3 Gene Detail
Summary
  • Symbol
    Cmtm3
  • Name
    CKLF-like MARVEL transmembrane domain containing 3
  • Synonyms
    9430096L06Rik, BNAS2, Cklfsf3
  • Feature Type
    protein coding gene
  • IDs
    MGI:2447162
    NCBI Gene: 68119
  • Alliance
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:104339410-104347672 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 53.04 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    37 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2447162
protein coding gene Chr8:104339383-104347672 (.)
129S1/SvImJ MGP_129S1SvImJ_G0034008
protein coding gene Chr8:106469449-106478072 (+)
A/J MGP_AJ_G0033989
protein coding gene Chr8:102246613-102253022 (+)
AKR/J MGP_AKRJ_G0033915
protein coding gene Chr8:105217199-105224277 (+)
BALB/cJ MGP_BALBcJ_G0033982
protein coding gene Chr8:102470149-102477216 (+)
C3H/HeJ MGP_C3HHeJ_G0033694
protein coding gene Chr8:105913689-105924359 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034502
protein coding gene Chr8:110376207-110382683 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031445
protein coding gene Chr8:95534138-95545074 (+)
CAST/EiJ MGP_CASTEiJ_G0033021
protein coding gene Chr8:105467127-105479309 (+)
CBA/J MGP_CBAJ_G0033668
protein coding gene Chr8:114030197-114038893 (+)
DBA/2J MGP_DBA2J_G0033822
protein coding gene Chr8:101613455-101620533 (+)
FVB/NJ MGP_FVBNJ_G0033769
protein coding gene Chr8:100544443-100552643 (+)
LP/J MGP_LPJ_G0033913
protein coding gene Chr8:106659629-106666110 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033811
protein coding gene Chr8:117213849-117224290 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034520
protein coding gene Chr8:105155933-105165847 (+)
PWK/PhJ MGP_PWKPhJ_G0032723
protein coding gene Chr8:101018422-101025493 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032562
protein coding gene Chr8:103993836-104000756 (+)
WSB/EiJ MGP_WSBEiJ_G0033136
protein coding gene Chr8:105841042-105855214 (+)



Homology
more
  • Human Ortholog
    CMTM3, CKLF like MARVEL transmembrane domain containing 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CMTM3, CKLF like MARVEL transmembrane domain containing 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BNAS2, CKLFSF3
  • Links
    NCBI Gene ID: 123920
    neXtProt AC: NX_Q96MX0
    UniProt: Q96MX0

  • Chr Location
    16q22.1; chr16:66604032-66613892 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 11486
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CMTM3
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000031875 Ensembl Gene Model | MGI Sequence Detail 8263 C57BL/6J ±  kb
transcript ENSMUST00000034343 Ensembl | MGI Sequence Detail 1616 Not Applicable  
polypeptide ENSMUSP00000034343 Ensembl | MGI Sequence Detail 184 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 79
    cDNA 78
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:1915369, MGI:2142526
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Gene Ontology 6
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:244597 Cui W, et al., Towards Functional Annotation of the Preimplantation Transcriptome: An RNAi Screen in Mammalian Embryos. Sci Rep. 2016 Nov 21;6:37396

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory