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Ssxb6 Gene Detail
Summary
  • Symbol
    Ssxb6
  • Name
    SSX member B6
  • Feature Type
    protein coding gene
  • IDs
    MGI:2446775
    NCBI Gene: 668976
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    ChrX:8408847-8414494 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 3.87 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    30 from dbSNP Build 142
  • Strain Annotations
    6
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2446775
 protein coding gene ChrX:8408843-8414494 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0035527
 protein coding gene ChrX:3579885-3587679 (+)
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0035232
 protein coding gene ChrX:3167435-3402251 (+)
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0035204
 protein coding gene ChrX:3847711-3854578 (+)
DBA/2J no annotation
FVB/NJ no annotation
LP/J MGP_LPJ_G0035439
 protein coding gene ChrX:3259696-3306261 (-)
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0034655
 protein coding gene ChrX:3026290-3446586 (+)



Homology
more
  • Human Ortholog
    SSX1, SSX family member 1
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SSX1, SSX family member 1
  • Synonyms
    CT5.1, SPGFX5, SSRC
  • Links
    NCBI Gene ID: 6756
    neXtProt AC: NX_Q16384
    UniProt: Q16384

  • Chr Location
    Xp11.23; chrX:48255392-48267444 (+)  GRCh38
  • Human Ortholog
    SSX3, SSX family member 3
  • Synonyms
    CT5.3
  • Links
    NCBI Gene ID: 10214
    neXtProt AC: NX_Q99909
    UniProt: Q99909

  • Chr Location
    Xp11.23; chrX:48346427-48356707 (-)  GRCh38
  • Human Ortholog
    SSX6P, SSX family member 6, pseudogene
  • Synonyms
    dJ54B20.1, psiSSX2, SSX6, SSXP2
  • Links
    NCBI Gene ID: 280657
    UniProt: Q7RTT6

  • Chr Location
    Xp11.23; chrX:48107982-48120686 (+)  GRCh38
Human Diseases
more
  • Diseases
    2 with human SSX1,SSX2 associations

Human Disease Mouse Models
      
IDs
IDs
Click on a disease name to see all genes associated with that disease.

Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    2
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000079702 Ensembl Gene Model | MGI Sequence Detail 5648 C57BL/6J ±  kb
transcript ENSMUST00000138642 Ensembl | MGI Sequence Detail 518 Not Applicable  
polypeptide ENSMUSP00000121642 Ensembl | MGI Sequence Detail 170 Not Applicable  
For the selected sequence
Protein
Information
less
References
more
  • Summaries
    All 9
    Gene Ontology 2
  • Earliest
    J:86525 Chen YT, et al., Identification and characterization of mouse SSX genes: a multigene family on the X chromosome with restricted cancer/testis expression. Genomics. 2003 Dec;82(6):628-36
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory