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Ssxb2
Gene Detail
 Symbol
Name
ID
Ssxb2
synovial sarcoma, X member B, breakpoint 2
MGI:2446771
Feature Type protein coding gene
Genetic Map
Chromosome X
3.83 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
ChrX:8454345-8461726 bp, - strand
From VEGA annotation of GRCm38

  7382 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:133052  Vertebrate Homology Class
2 human; 1 mouse; 2 cattle; 1 dog

Gene Tree: Ssxb2

Human
homologs
Human Homolog SSX4, synovial sarcoma, X breakpoint 4
NCBI Gene ID 6759
neXtProt AC  NX_O60224
Human Synonyms  CT5.4
Human Chr (Location)  Xp11.23; chrX:48383527-48393343 (+)  GRCh38
Human Homolog SSX4B, synovial sarcoma, X breakpoint 4B
NCBI Gene ID 548313
neXtProt AC  NX_O60224
Human Synonyms  CT5.4
Human Chr (Location)  Xp11.23; chrX:48402082-48411910 (-)  GRCh38
Mutations,
alleles, and
phenotypes
Incidental mutations (data from APF )
Interactions
Ssxb2 interacts with 43 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(4)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(4) cDNA(4)
Microarray probesets(1)
Other database
links
VEGA Gene ModelOTTMUSG00000016666 (Evidence)
Ensembl Gene ModelENSMUSG00000023165 (Evidence)
Entrez Gene387132 (Evidence)
DFCITC1595561, TC1596036
DoTSDT.55222342, DT.97378491
Consensus CDS ProjectCCDS29998.1, CCDS52991.1
International Mouse Knockout Project StatusSsxb2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000016666 VEGA Gene Model | MGI Sequence Detail 7382 C57BL/6J ±  kb
transcript OTTMUST00000040443 VEGA | MGI Sequence Detail 927 Not Applicable 
polypeptide OTTMUSP00000018070 VEGA | MGI Sequence Detail 165 Not Applicable 

For the selected sequences
All sequences(25) RefSeq(4) UniProt(2)
Polymorphisms SNPs within 2kb(40 from dbSNP Build 137)    SNPs within 2kb including multiple locations(62)
Protein-related
information
ResourceIDDescription
InterPro IPR001909 Krueppel-associated box
InterPro IPR003655 Krueppel-associated box-related
InterPro IPR019041 SSXRD motif
References (Earliest) J:86525 Chen YT, et al., Identification and characterization of mouse SSX genes: a multigene family on the X chromosome with restricted cancer/testis expression. Genomics. 2003 Dec;82(6):628-36
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(15)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/23/2014
MGI 5.19
The Jackson Laboratory