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Vps33b
Gene Detail
 Symbol
Name
ID
Vps33b
vacuolar protein sorting 33B (yeast)
MGI:2446237
Synonyms MGC:36556
Feature Type protein coding gene
Genetic Map
Chromosome 7
45.59 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr7:80269649-80291579 bp, + strand
From VEGA annotation of GRCm38

  21931 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:10261  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: vacuolar protein sorting-associated protein 33
Gene Tree: Vps33b

Human
homologs
Human Homolog VPS33B, vacuolar protein sorting 33 homolog B (yeast)
NCBI Gene ID 26276
neXtProt AC  NX_Q9H267
Human Chr (Location)  15q26.1; chr15:90998416-91022621 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human VPS33B
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(2) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Vps33b interacts with 128 markers (Mir15a, Mir15b, Mir16-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (17 annotations)
Process lysosome localization, melanosome localization, ...
Component cytoplasm, endosome, ...
Function protein binding
This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (27)    Tissues (5)    Images (16)
Theiler Stages: 23
Assay TypeResults
RNA in situ 27
cDNA source data(25)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(25) cDNA(25)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000017577 (Evidence)
Ensembl Gene ModelENSMUSG00000030534 (Evidence)
Entrez Gene233405 (Evidence)
UniGene322870
DFCITC1583814, TC1603100, TC1715226
DoTSDT.101365097, DT.101365098, DT.55108123, DT.55207879, DT.91332194
NIA Mouse Gene IndexU008280
Consensus CDS ProjectCCDS39997.1
International Mouse Knockout Project StatusVps33b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000017577 VEGA Gene Model | MGI Sequence Detail 21931 C57BL/6J ±  kb
transcript OTTMUST00000042739 VEGA | MGI Sequence Detail 2574 Not Applicable 
polypeptide OTTMUSP00000019195 VEGA | MGI Sequence Detail 617 Not Applicable 

For the selected sequences
All sequences(67) RefSeq(20) UniProt(4)
Polymorphisms SNPs within 2kb(255 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR027482 Sec1-like, domain 2
InterPro IPR001619 Sec1-like protein
InterPro IPR027121 Vacuolar protein sorting-associated protein 33
Protein Ontology PR:000017332 vacuolar protein sorting-associated protein 33B
References (Earliest) J:99274 Gissen P, et al., Comparative evolutionary analysis of VPS33 homologues: genetic and functional insights. Hum Mol Genet. 2005 May 15;14(10):1261-70
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(33)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/26/2014
MGI 5.19
The Jackson Laboratory