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Samd11 Gene Detail
Summary
  • Symbol
    Samd11
  • Name
    sterile alpha motif domain containing 11
  • Synonyms
    MGC:38976, mr-s
  • Feature Type
    protein coding gene
  • IDs
    MGI:2446220
    NCBI Gene: 231004
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:156246966-156255657 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    171 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2446220
protein coding gene Chr4:156246966-156256011 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029254
protein coding gene Chr4:160619461-160628390 (-)
A/J MGP_AJ_G0029219
protein coding gene Chr4:153853593-153863429 (-)
AKR/J MGP_AKRJ_G0029167
protein coding gene Chr4:158046776-158056762 (-)
BALB/cJ MGP_BALBcJ_G0029235
protein coding gene Chr4:154329846-154338966 (-)
C3H/HeJ MGP_C3HHeJ_G0028956
protein coding gene Chr4:158622601-158632726 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029684
protein coding gene Chr4:166321973-166336711 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026927
protein coding gene Chr4:146130424-146139548 (-)
CAST/EiJ MGP_CASTEiJ_G0028368
protein coding gene Chr4:156039789-156056265 (-)
CBA/J MGP_CBAJ_G0028918
protein coding gene Chr4:171387564-171399750 (-)
DBA/2J MGP_DBA2J_G0029067
protein coding gene Chr4:153873417-153882512 (-)
FVB/NJ MGP_FVBNJ_G0029030
protein coding gene Chr4:153123493-153133023 (-)
LP/J MGP_LPJ_G0029157
protein coding gene Chr4:160582445-160591602 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029057
protein coding gene Chr4:174146509-174157233 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029716
protein coding gene Chr4:158677157-158686097 (-)
PWK/PhJ MGP_PWKPhJ_G0028088
protein coding gene Chr4:150016136-150027331 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027922
protein coding gene Chr4:152926354-152933832 (-)
WSB/EiJ MGP_WSBEiJ_G0028448
protein coding gene Chr4:158860695-158871581 (-)



Homology
more
  • Human Ortholog
    SAMD11, sterile alpha motif domain containing 11
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SAMD11, sterile alpha motif domain containing 11
    Orthology source: HomoloGene, HGNC
  • Synonyms
    MRS
  • Links
    NCBI Gene ID: 148398
    neXtProt AC: NX_Q96NU1
    UniProt: Q96NU1

  • Chr Location
    1p36.33; chr1:925741-944581 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 34983
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SAMD11
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000096351 Ensembl Gene Model | MGI Sequence Detail 8692 C57BL/6J ±  kb
transcript ENSMUST00000179919 Ensembl | MGI Sequence Detail 2610 Not Applicable  
polypeptide ENSMUSP00000136611 Ensembl | MGI Sequence Detail 552 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    5 Sequences
  • InterPro Domains
    IPR001660 Sterile alpha motif domain
    IPR013761 Sterile alpha motif/pointed domain superfamily
Molecular
Reagents
less
  • All nucleic 8
    cDNA 7
    Primer pair 1

    Microarray probesets 1
References
more
  • Summaries
    All 14
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 1
  • Earliest
    J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
  • Latest
    J:109350 Inoue T, et al., Cloning and characterization of mr-s, a novel SAM domain protein, predominantly expressed in retinal photoreceptor cells. BMC Dev Biol. 2006;6:15

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory