Farp1 MGI Mouse Gene Detail - MGI:2446173 - FERM, ARH/RhoGEF and pleckstrin domain protein 1

Symbol

Farp1
Name

FERM, ARH/RhoGEF and pleckstrin domain protein 1
Synonyms

Cdep

Feature Type

protein coding gene
IDs

MGI:2446173
NCBI Gene: 223254
Alliance

gene page
Transcription Start Sites

18 TSS

Sequence Map

Chr14:121272612-121521156 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 14, 64.86 cM
Mapping Data

1 experiment

SNPs within 2kb

12905 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2446173	protein coding gene	Chr14:121272563-121521156 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0021660	protein coding gene	Chr14:118792646-119067617 (+)
A/J	MGP_AJ_G0021620	protein coding gene	Chr14:114236296-114486518 (+)
AKR/J	MGP_AKRJ_G0021596	protein coding gene	Chr14:117922253-118186609 (+)
BALB/cJ	MGP_BALBcJ_G0021626	protein coding gene	Chr14:114773434-115023253 (+)
C3H/HeJ	MGP_C3HHeJ_G0021404	protein coding gene	Chr14:117813852-118079645 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0022066	protein coding gene	Chr14:123381411-123668476 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0019604	protein coding gene	Chr14:110135967-110382521 (+)
CAST/EiJ	MGP_CASTEiJ_G0020919	protein coding gene	Chr14:115698714-115966651 (+)
CBA/J	MGP_CBAJ_G0021372	protein coding gene	Chr14:128085083-128366412 (+)
DBA/2J	MGP_DBA2J_G0021495	protein coding gene	Chr14:114108027-114358948 (+)
FVB/NJ	MGP_FVBNJ_G0021473	protein coding gene	Chr14:112430181-112685918 (+)
LP/J	MGP_LPJ_G0021563	protein coding gene	Chr14:119763869-120033270 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0021500	protein coding gene	Chr14:133123953-133397163 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0022089	protein coding gene	Chr14:117466631-117739910 (+)
PWK/PhJ	MGP_PWKPhJ_G0020663	protein coding gene	Chr14:111145966-111397294 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0020501	protein coding gene	Chr14:113695987-113950536 (+)
WSB/EiJ	MGP_WSBEiJ_G0020975	protein coding gene	Chr14:118181138-118448053 (+)

Human Ortholog

FARP1, FERM, ARH/RhoGEF and pleckstrin domain protein 1

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

FARP1, FERM, ARH/RhoGEF and pleckstrin domain protein 1
Synonyms

CDEP, FARP1-IT1, GLCC1, PLEKHC2, PPP1R75
Links

HGNC:3591

NCBI Gene ID: 10160

UniProt: Q9Y4F1
Chr Location

13q32.2; chr13:98142562-98455176 (+) GRCh38

MGI Vertebrate Homology

Farp1 stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: FARP1
Gene Tree

Farp1

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Phenotype Summary

4 phenotypes from 1 allele in 1 genetic background
11 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

8
Chemically induced (other)

1
Endonuclease-mediated

2
Gene trapped

2
Targeted

3
Genomic Mutations

1 involving Farp1
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

55 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

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All GO Annotations

51
GO References

10

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

752
Tissues

32
cDNA Data

143
Literature Summary

2

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

GEISHA FARP1

Xenbase farp1

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All Sequences

83
RefSeq

16
UniProt

8
CCDS

CCDS37015.1

Ensembl

ENSMUSG00000025555 (Evidence)
NCBI Gene

223254

			Length	Strain/Species	Flank
genomic	ENSMUSG00000025555	Ensembl Gene Model \| MGI Sequence Detail	248545	C57BL/6J	± kb
transcript	ENSMUST00000026635	Ensembl \| MGI Sequence Detail	4885	Not Applicable
polypeptide	ENSMUSP00000026635	Ensembl \| MGI Sequence Detail	1048	Not Applicable

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UniProt

8 Sequences
Protein Ontology

PR:000007343 FERM, ARHGEF and pleckstrin domain-containing protein 1

(term hierarchy)
InterPro Domains

IPR019749 Band 4.1 domain

IPR000219 Dbl homology (DH) domain

IPR035899 Dbl homology (DH) domain superfamily

IPR000798 Ezrin/radixin/moesin-like

IPR041788 FARP1/FARP2/FRMD7, FERM domain C-lobe

IPR014352 FERM/acyl-CoA-binding protein superfamily

IPR014847 FERM adjacent

IPR019748 FERM central domain

IPR019747 FERM conserved site

IPR018980 FERM, C-terminal PH-like domain

IPR000299 FERM domain

IPR018979 FERM, N-terminal

IPR035963 FERM superfamily, second domain

IPR011993 PH-like domain superfamily

IPR001849 Pleckstrin homology domain

IPR051835 RAC1-specific guanine nucleotide exchange factor

IPR029071 Ubiquitin-like domain superfamily
GlyGen

F8VPU2 3 sites, 1 O-linked glycan (1 site)

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All nucleic 144

cDNA 143

Other 1

Microarray probesets 4

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MGI:2145808

Summaries

All 43

Developmental Gene Expression 2

Gene Ontology 10

Phenotypes 11
Earliest

J:86639 Luo ZG, et al., Implication of geranylgeranyltransferase I in synapse formation. Neuron. 2003 Nov 13;40(4):703-17
Latest

J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for Farp1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr127267	Chr14:121272568-121272598 (+)	-29 bp
Tssr127268	Chr14:121272606-121272620 (+)	1 bp
Tssr127269	Chr14:121272848-121272859 (+)	242 bp
Tssr127270	Chr14:121272875-121272891 (+)	271 bp
Tssr127271	Chr14:121272896-121272912 (+)	292 bp
Tssr127272	Chr14:121272921-121272932 (+)	315 bp
Tssr127273	Chr14:121272950-121272987 (+)	357 bp
Tssr127274	Chr14:121273094-121273105 (+)	488 bp
Tssr127275	Chr14:121273171-121273214 (+)	581 bp
Tssr127276	Chr14:121273217-121273238 (+)	616 bp
Tssr127277	Chr14:121295045-121295049 (+)	22,435 bp
Tssr4533	Chr14:121300618-121300625 (+)	28,010 bp
Tssr127278	Chr14:121344883-121344884 (+)	72,272 bp
Tssr127279	Chr14:121384214-121384219 (+)	111,605 bp
Tssr127280	Chr14:121468347-121468351 (+)	195,737 bp
Tssr127281	Chr14:121477089-121477096 (+)	204,481 bp
Tssr127282	Chr14:121477137-121477149 (+)	204,531 bp
Tssr127283	Chr14:121477150-121477160 (+)	204,543 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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