About   Help   FAQ
Take the Alliance for Genomic Resources User Survey
Farp1 Gene Detail
Summary
  • Symbol
    Farp1
  • Name
    FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
  • Synonyms
    Cdep
  • Feature Type
    protein coding gene
  • IDs
    MGI:2446173
    NCBI Gene: 223254
  • Gene Overview
    MyGene.info: FARP1
Location & Maps
more
  • Sequence Map
    Chr14:121035200-121283744 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser
  • Download
    Sequence
      248545 bp   ±  kb flank

  • Genome Browsers
    VEGA | Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 64.86 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    FARP1, FERM, ARH/RhoGEF and pleckstrin domain protein 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    FARP1, FERM, ARH/RhoGEF and pleckstrin domain protein 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CDEP, FARP1-IT1, PLEKHC2, PPP1R75
  • Links
    NCBI Gene ID: 10160
    neXtProt AC: NX_Q9Y4F1

  • Chr Location
    13q32.2; chr13:98142562-98449773 (+)  GRCh38.p2
  • HomoloGene
    Vertebrate Homology Class 38098
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed
  • HCOP
    human homology predictions: FARP1
  • Gene Tree
    Farp1
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    1
  • Gene trapped
    3
  • Targeted
    3
  • Genomic Mutations
    1 involving Farp1
  • Incidental Mutations
    Mutagenetix , APF
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    22
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    42
  • Tissues
    28
  • cDNA Data
    142
  • Literature Summary
    1
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000026446 VEGA Gene Model | MGI Sequence Detail 248545 C57BL/6J ±  kb
transcript OTTMUST00000065407 VEGA | MGI Sequence Detail 4885 Not Applicable  
polypeptide OTTMUSP00000032599 VEGA | MGI Sequence Detail 1048 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    2612 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 143
    cDNA 142
    Other 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:2145808
References
more
  • Summaries
    All 30
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 7
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:195238 Cheadle L, et al., The novel synaptogenic protein Farp1 links postsynaptic cytoskeletal dynamics and transsynaptic organization. J Cell Biol. 2012 Dec 10;199(6):985-1001
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support. 		last database update
09/27/2016
MGI 6.05 		The Jackson Laboratory