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Scml4 Gene Detail
Summary
  • Symbol
    Scml4
  • Name
    Scm polycomb group protein like 4
  • Synonyms
    MGC:49264
  • Feature Type
    protein coding gene
  • IDs
    MGI:2446140
    NCBI Gene: 268297
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:42860370-42960780 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 22.89 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    603 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2446140
 protein coding gene Chr10:42858077-42960782 (+)
129S1/SvImJ MGP_129S1SvImJ_G0017189
 protein coding gene Chr10:41590270-41696760 (+)
A/J MGP_AJ_G0017166
 protein coding gene Chr10:40429548-40534258 (+)
AKR/J MGP_AKRJ_G0017126
 protein coding gene Chr10:41037819-41142824 (+)
BALB/cJ MGP_BALBcJ_G0017128
 protein coding gene Chr10:40484609-40584788 (+)
C3H/HeJ MGP_C3HHeJ_G0016949
 protein coding gene Chr10:41394980-41505807 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017587
 protein coding gene Chr10:42859257-42966432 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015283
 protein coding gene Chr10:38279475-38374483 (+)
CAST/EiJ MGP_CASTEiJ_G0016528
 protein coding gene Chr10:41600690-41705969 (+)
CBA/J MGP_CBAJ_G0016923
 protein coding gene Chr10:44849670-44952291 (+)
DBA/2J MGP_DBA2J_G0017028
 protein coding gene Chr10:39913694-40014286 (+)
FVB/NJ MGP_FVBNJ_G0017023
 protein coding gene Chr10:39404517-39504305 (+)
LP/J MGP_LPJ_G0017105
 protein coding gene Chr10:41599872-41705629 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017053
 protein coding gene Chr10:45564805-45670681 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017624
 protein coding gene Chr10:41030471-41142413 (+)
PWK/PhJ MGP_PWKPhJ_G0016308
 protein coding gene Chr10:39788018-39890110 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016092
 protein coding gene Chr10:40862702-40978986 (+)
WSB/EiJ MGP_WSBEiJ_G0016591
 protein coding gene Chr10:41327445-41436121 (+)



Homology
more
  • Human Ortholog
    SCML4, Scm polycomb group protein like 4
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SCML4, Scm polycomb group protein like 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    dJ47M23.1
  • Links
    NCBI Gene ID: 256380
    neXtProt AC: NX_Q8N228
    UniProt: Q8N228

  • Chr Location
    6q21; chr6:107697297-107845959 (-)  GRCh38.p7
  • HomoloGene
    Vertebrate Homology Class 18262
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SCML4
  • Gene Tree
    Scml4
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    631
  • cDNA Data
    36
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000044770 Ensembl Gene Model | MGI Sequence Detail 100411 C57BL/6J ±  kb
transcript ENSMUST00000063063 Ensembl | MGI Sequence Detail 4885 Not Applicable  
polypeptide ENSMUSP00000053157 Ensembl | MGI Sequence Detail 408 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 36
    cDNA 36

    Microarray probesets 3
References
more
  • Summaries
    All 28
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/20/2020
MGI 6.16 		The Jackson Laboratory