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Phf3 Gene Detail
Summary
  • Symbol
    Phf3
  • Name
    PHD finger protein 3
  • Synonyms
    2310061N19Rik, AU020177, mKIAA0244
  • Feature Type
    protein coding gene
  • IDs
    MGI:2446126
    NCBI Gene: 213109
Location & Maps
more
  • Sequence Map
    Chr1:30802339-30873921 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      71583 bp   ±  kb flank

  • Genome Browsers
Homology
more
  • Human Ortholog
    PHF3, PHD finger protein 3
  • Vertebrate Orthologs
    9
  • Human Ortholog
    PHF3, PHD finger protein 3
    Orthology source: HGNC, HomoloGene
  • Links
    NCBI Gene ID: 23469
    neXtProt AC: NX_Q92576

  • Chr Location
    6q12; chr6:63635802-63715522 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 9040
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog
  • HCOP
    human homology predictions: PHF3
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    72
  • Chemically induced (other)
    1
  • Gene trapped
    69
  • Targeted
    2
  • Genomic Mutations
    1 involving Phf3
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000048797 VEGA Gene Model | MGI Sequence Detail 71583 C57BL/6J ±  kb
transcript OTTMUST00000124826 VEGA | MGI Sequence Detail 7567 Not Applicable  
polypeptide OTTMUSP00000067830 VEGA | MGI Sequence Detail 2025 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    482 from dbSNP Build 137
Protein
Information
less
  • UniProt
    12 Sequences
  • InterPro Domains
    IPR012921 Spen paralogue and orthologue SPOC, C-terminal
    IPR003618 Transcription elongation factor S-II, central domain
    IPR017890 Transcription elongation factor S-IIM
    IPR011011 Zinc finger, FYVE/PHD-type
    IPR019787 Zinc finger, PHD-finger
    IPR001965 Zinc finger, PHD-type
    IPR019786 Zinc finger, PHD-type, conserved site
    IPR013083 Zinc finger, RING/FYVE/PHD-type
Molecular
Reagents
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  • All nucleic 24
    cDNA 24

    Microarray probesets 12
Other
Accession IDs
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MGI:1914213, MGI:2138199, MGI:2138419, MGI:2138455
References
more
  • Summaries
    All 32
    Developmental Gene Expression 2
    Phenotypes 9
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
01/26/2016
MGI 6.02
The Jackson Laboratory