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Phf3 Gene Detail
Summary
  • Symbol
    Phf3
  • Name
    PHD finger protein 3
  • Synonyms
    2310061N19Rik, AU020177, mKIAA0244
  • Feature Type
    protein coding gene
  • IDs
    MGI:2446126
    NCBI Gene: 213109
  • Gene Overview
    MyGene.info: PHF3
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:30802339-30873921 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 11.45 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    479 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2446126
protein coding gene Chr1:30802339-30873925 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015895
protein coding gene Chr1:28991812-29070220 (-)
A/J MGP_AJ_G0015877
protein coding gene Chr1:28316468-28382205 (-)
AKR/J MGP_AKRJ_G0015833
protein coding gene Chr1:28617988-28685424 (-)
BALB/cJ MGP_BALBcJ_G0015832
protein coding gene Chr1:28062167-28131584 (-)
C3H/HeJ MGP_C3HHeJ_G0015666
protein coding gene Chr1:28775974-28846939 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016286
protein coding gene Chr1:30346017-30421673 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014005
protein coding gene Chr1:25742197-25807350 (-)
CAST/EiJ MGP_CASTEiJ_G0015245
protein coding gene Chr1:28715547-28786160 (-)
CBA/J MGP_CBAJ_G0015638
protein coding gene Chr1:31137868-31218252 (-)
DBA/2J MGP_DBA2J_G0015738
protein coding gene Chr1:27761165-27832065 (-)
FVB/NJ MGP_FVBNJ_G0015741
protein coding gene Chr1:27326515-27392318 (-)
LP/J MGP_LPJ_G0015809
protein coding gene Chr1:29291021-29360854 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015761
protein coding gene Chr1:33245505-33318461 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016333
protein coding gene Chr1:28600835-28667104 (-)
PWK/PhJ MGP_PWKPhJ_G0015028
protein coding gene Chr1:27430928-27497632 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014809
protein coding gene Chr1:28676928-28742117 (-)
WSB/EiJ MGP_WSBEiJ_G0015309
protein coding gene Chr1:28552038-28618855 (-)



Homology
more
  • Human Ortholog
    PHF3, PHD finger protein 3
  • Vertebrate Orthologs
    9
  • Human Ortholog
    PHF3, PHD finger protein 3
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 23469
    neXtProt AC: NX_Q92576
    UniProt: Q92576

  • Chr Location
    6q12; chr6:63635802-63715522 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 9040
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: PHF3
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000048874 Ensembl Gene Model | MGI Sequence Detail 71583 C57BL/6J ±  kb
transcript ENSMUST00000186733 Ensembl | MGI Sequence Detail 7567 Not Applicable  
polypeptide ENSMUSP00000139610 Ensembl | MGI Sequence Detail 2025 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    12 Sequences
  • InterPro Domains
    IPR012921 Spen paralogue and orthologue SPOC, C-terminal
    IPR003618 Transcription elongation factor S-II, central domain
    IPR036575 Transcription elongation factor S-II, central domain superfamily
    IPR011011 Zinc finger, FYVE/PHD-type
    IPR019787 Zinc finger, PHD-finger
    IPR001965 Zinc finger, PHD-type
    IPR019786 Zinc finger, PHD-type, conserved site
    IPR013083 Zinc finger, RING/FYVE/PHD-type
Molecular
Reagents
less
  • All nucleic 25
    cDNA 25

    Microarray probesets 12
Other
Accession IDs
less
MGI:1914213, MGI:2138199, MGI:2138419, MGI:2138455
References
more
  • Summaries
    All 34
    Developmental Gene Expression 2
    Phenotypes 9
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory