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Phf3
Gene Detail
 Symbol
Name
ID
Phf3
PHD finger protein 3
MGI:2446126
Synonyms 2310061N19Rik, AU020177, mKIAA0244
Feature Type protein coding gene
Genetic Map
Chromosome 1
11.45 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr1:30802342-30863256 bp, - strand
From NCBI annotation of GRCm38

  60915 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9040  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

Gene Tree: Phf3

Human
homologs
Human Homolog PHF3, PHD finger protein 3
NCBI Gene ID 23469
neXtProt AC  NX_Q92576
Human Chr (Location)  6q12; chr6:63635802-63714511 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(66) : Gene trapped(64) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Phf3 interacts with 348 markers (Mir1a-2, Mir1b, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function metal ion binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (66)    Tissues (43)    Images (15)
Theiler Stages: 19, 23, 28
Assay TypeResults
RNA in situ 66
cDNA source data(24)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(24) cDNA(24)
Microarray probesets(12)
Other database
links
Ensembl Gene ModelENSMUSG00000048874 (Evidence)
Entrez Gene213109 (Evidence)
DFCITC1581899, TC1598389, TC1599325, TC1626669, TC1702398
DoTSDT.101391348, DT.485621, DT.487756, DT.91363142, DT.94136169
NIA Mouse Gene IndexU021198
Consensus CDS ProjectCCDS35530.1
International Mouse Knockout Project StatusPhf3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 213109 NCBI Gene Model | MGI Sequence Detail 60915 C57BL/6J ±  kb
transcript NM_001081080 RefSeq | MGI Sequence Detail 7561 Not Specified 
polypeptide NP_001074549 RefSeq | MGI Sequence Detail 2025 Not Specified 

For the selected sequences
All sequences(67) RefSeq(15) UniProt(8)
Polymorphisms SNPs within 2kb(435 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR012921 Spen paralogue and orthologue SPOC, C-terminal
InterPro IPR003618 Transcription elongation factor S-II, central domain
InterPro IPR017890 Transcription elongation factor S-IIM
InterPro IPR011011 Zinc finger, FYVE/PHD-type
InterPro IPR019787 Zinc finger, PHD-finger
InterPro IPR001965 Zinc finger, PHD-type
InterPro IPR019786 Zinc finger, PHD-type, conserved site
InterPro IPR013083 Zinc finger, RING/FYVE/PHD-type
Protein Ontology PR:000012651 PHD finger protein 3
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(38)
Other
accession IDs
MGI:1914213, MGI:2138199, MGI:2138419, MGI:2138455

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory