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Phf3 Gene Detail
Summary
  • Symbol
    Phf3
  • Name
    PHD finger protein 3
  • Synonyms
    2310061N19Rik, AU020177, mKIAA0244
  • Feature Type
    protein coding gene
  • IDs
    MGI:2446126
    NCBI Gene: 213109
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:30841417-30912989 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 1, 11.45 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    479 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2446126
protein coding gene Chr1:30841417-30913002 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015895
protein coding gene Chr1:28991812-29070220 (-)
A/J MGP_AJ_G0015877
protein coding gene Chr1:28316468-28382205 (-)
AKR/J MGP_AKRJ_G0015833
protein coding gene Chr1:28617988-28685424 (-)
BALB/cJ MGP_BALBcJ_G0015832
protein coding gene Chr1:28062167-28131584 (-)
C3H/HeJ MGP_C3HHeJ_G0015666
protein coding gene Chr1:28775974-28846939 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016286
protein coding gene Chr1:30346017-30421673 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014005
protein coding gene Chr1:25742197-25807350 (-)
CAST/EiJ MGP_CASTEiJ_G0015245
protein coding gene Chr1:28715547-28786160 (-)
CBA/J MGP_CBAJ_G0015638
protein coding gene Chr1:31137868-31218252 (-)
DBA/2J MGP_DBA2J_G0015738
protein coding gene Chr1:27761165-27832065 (-)
FVB/NJ MGP_FVBNJ_G0015741
protein coding gene Chr1:27326515-27392318 (-)
LP/J MGP_LPJ_G0015809
protein coding gene Chr1:29291021-29360854 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015761
protein coding gene Chr1:33245505-33318461 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016333
protein coding gene Chr1:28600835-28667104 (-)
PWK/PhJ MGP_PWKPhJ_G0015028
protein coding gene Chr1:27430928-27497632 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014809
protein coding gene Chr1:28676928-28742117 (-)
WSB/EiJ MGP_WSBEiJ_G0015309
protein coding gene Chr1:28552038-28618855 (-)



Homology
more
  • Human Ortholog
    PHF3, PHD finger protein 3
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PHF3, PHD finger protein 3
  • Links
    NCBI Gene ID: 23469
    neXtProt AC: NX_Q92576
    UniProt: Q92576

  • Chr Location
    6q12; chr6:63635802-63779336 (+)  GRCh38

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 213109 NCBI Gene Model | MGI Sequence Detail 71573 C57BL/6J ±  kb
transcript NM_001081080 RefSeq | MGI Sequence Detail 7890 C57BL/6  
polypeptide NP_001074549 RefSeq | MGI Sequence Detail 2025 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    12 Sequences
  • InterPro Domains
    IPR012921 Spen paralogue and orthologue SPOC, C-terminal
    IPR037869 Spp1/CFP1
    IPR003618 Transcription elongation factor S-II, central domain
    IPR036575 Transcription elongation factor S-II, central domain superfamily
    IPR011011 Zinc finger, FYVE/PHD-type
    IPR019787 Zinc finger, PHD-finger
    IPR001965 Zinc finger, PHD-type
    IPR019786 Zinc finger, PHD-type, conserved site
    IPR013083 Zinc finger, RING/FYVE/PHD-type
Molecular
Reagents
less
  • All nucleic 25
    cDNA 25

    Microarray probesets 12
Other
Accession IDs
less
MGI:1914213, MGI:2138199, MGI:2138419, MGI:2138455
References
more
  • Summaries
    All 39
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 13
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/12/2024
MGI 6.23
The Jackson Laboratory