About   Help   FAQ
Slc36a1
Gene Detail
 Symbol
Name
ID
Slc36a1
solute carrier family 36 (proton/amino acid symporter), member 1
MGI:2445299
Synonyms 5830411H19Rik, Pat1
Feature Type protein coding gene
Genetic Map
Chromosome 11
32.33 cM
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr11:55204350-55236330 bp, + strand
From VEGA annotation of GRCm38

  31981 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:121860  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Slc36a1

Human
homologs
Human Homolog SLC36A1, solute carrier family 36 (proton/amino acid symporter), member 1
NCBI Gene ID 206358
neXtProt AC  NX_Q7Z2H8
Human Synonyms  Dct1, LYAAT1, PAT1, TRAMD3
Human Chr (Location)  5q33.1; chr5:151436992-151517446 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Gene trapped(2) Targeted(3)
Genomic Mutations involving Slc36a1 (1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Slc36a1 interacts with 300 markers (Mir1b, Mir7-1, Mir9-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (27 annotations)
Process amino acid transmembrane transport, amino acid transport, ...
Component endoplasmic reticulum, integral component of membrane, ...
Function glycine transmembrane transporter activity, hydrogen:amino acid symporter activity, ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (184)    Tissues (58)    Images (41)
Theiler Stages: 22, 23, 26
Assay TypeResults
RNA in situ 184
cDNA source data(41)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(42) cDNA(41) Primer pair(1)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000005687 (Evidence)
Ensembl Gene ModelENSMUSG00000020261 (Evidence)
Entrez Gene215335 (Evidence)
UniGene35732
DFCITC1585854, TC1697484
DoTSDT.101364743, DT.101364744, DT.94252649
NIA Mouse Gene IndexU012625
Consensus CDS ProjectCCDS36156.1
International Mouse Knockout Project StatusSlc36a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005687 VEGA Gene Model | MGI Sequence Detail 31981 C57BL/6J ±  kb
transcript OTTMUST00000012656 VEGA | MGI Sequence Detail 1611 Not Applicable 
polypeptide OTTMUSP00000005862 VEGA | MGI Sequence Detail 475 Not Applicable 

For the selected sequences
All sequences(40) RefSeq(4) UniProt(3)
Polymorphisms SNPs within 2kb(261 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR013057 Amino acid transporter, transmembrane
Protein Ontology PR:000015110 proton-coupled amino acid transporter 1
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(33)
Other
accession IDs
MGI:1923260, MGI:2144275

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
09/16/2014
MGI 5.19
The Jackson Laboratory