About   Help   FAQ
Slc36a1 Gene Detail
Summary
  • Symbol
    Slc36a1
  • Name
    solute carrier family 36 (proton/amino acid symporter), member 1
  • Synonyms
    5830411H19Rik, Pat1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2445299
    NCBI Gene: 215335
  • Gene Overview
    MyGene.info: SLC36A1
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:55204350-55236330 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 32.33 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    261 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2445299
protein coding gene Chr11:55204320-55236330 (.)
129S1/SvImJ MGP_129S1SvImJ_G0018328
protein coding gene Chr11:54718144-54750591 (+)
A/J MGP_AJ_G0018297
protein coding gene Chr11:52679358-52711551 (+)
AKR/J MGP_AKRJ_G0018266
protein coding gene Chr11:54405119-54439148 (+)
BALB/cJ MGP_BALBcJ_G0018268
protein coding gene Chr11:53019477-53051818 (+)
C3H/HeJ MGP_C3HHeJ_G0018079
protein coding gene Chr11:54338451-54376725 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018720
protein coding gene Chr11:56378977-56410750 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016370
protein coding gene Chr11:50112867-50145266 (+)
CAST/EiJ MGP_CASTEiJ_G0017644
protein coding gene Chr11:54387111-54421722 (+)
CBA/J MGP_CBAJ_G0018054
protein coding gene Chr11:59072474-59105835 (+)
DBA/2J MGP_DBA2J_G0018163
protein coding gene Chr11:52377039-52408747 (+)
FVB/NJ MGP_FVBNJ_G0018155
protein coding gene Chr11:52040319-52074057 (+)
LP/J MGP_LPJ_G0018238
protein coding gene Chr11:55177116-55212548 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0018181
protein coding gene Chr11:60261928-60296129 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018762
protein coding gene Chr11:54424260-54456079 (+)
PWK/PhJ MGP_PWKPhJ_G0017417
protein coding gene Chr11:52941082-52973532 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017212
protein coding gene Chr11:54223219-54255206 (+)
WSB/EiJ MGP_WSBEiJ_G0017692
protein coding gene Chr11:54060920-54095411 (+)



Homology
more
  • Human Ortholog
    SLC36A1, solute carrier family 36 member 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SLC36A1, solute carrier family 36 member 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    Dct1, LYAAT1, PAT1, TRAMD3
  • Links
    NCBI Gene ID: 206358
    neXtProt AC: NX_Q7Z2H8
    UniProt: Q7Z2H8

  • Chr Location
    5q33.1; chr5:151411344-151556318 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000020261 Ensembl Gene Model | MGI Sequence Detail 31981 C57BL/6J ±  kb
transcript ENSMUST00000108872 Ensembl | MGI Sequence Detail 5264 Not Applicable  
polypeptide ENSMUSP00000104500 Ensembl | MGI Sequence Detail 475 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 43
    cDNA 42
    Primer pair 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:1923260, MGI:2144275
References
more
  • Summaries
    All 35
    Developmental Gene Expression 3
    Diseases 1
    Gene Ontology 6
    Phenotypes 7
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/06/2018
MGI 6.13
The Jackson Laboratory