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Slc36a1
Gene Detail
Symbol

Name
ID
Slc36a1
solute carrier family 36 (proton/amino acid symporter), member 1
MGI:2445299
Synonyms
5830411H19Rik, Pat1
Feature Type
protein coding gene
Genetic Map
Chromosome 11
32.33 cM
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr11:55204350-55236330 bp, + strand
From VEGA annotation of GRCm38

  31981 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:121860  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SLC36A1
Gene Tree: Slc36a1

Human
homologs
SLC36A1, solute carrier family 36 (proton/amino acid symporter), member 1
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 206358
neXtProt AC: NX_Q7Z2H8

Human Synonyms: Dct1, LYAAT1, PAT1, TRAMD3

Human Chr (Location): 5q33.1; chr5:151411344-151561961 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Gene trapped(2) Targeted(3)
Genomic Mutations involving Slc36a1 (1)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Slc36a1 interacts with 299 markers (Mir1b, Mir7-1, Mir9-1, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (3 records)
Data Summary: Results (184)    Tissues (58)    Images (41)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 184
cDNA source data(41)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase LOC100492769    NEW 
Molecular
reagents
All nucleic(42) cDNA(41) Primer pair(1)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000005687 (Evidence)
Ensembl Gene Model ENSMUSG00000020261 (Evidence)
Entrez Gene 215335 (Evidence)
UniGene 35732
DFCI TC1585854, TC1697484
DoTS DT.101364743, DT.101364744, DT.94252649
NIA Mouse Gene Index U012625
Consensus CDS Project CCDS36156.1
International Mouse Phenotyping Consortium Status Slc36a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005687 VEGA Gene Model | MGI Sequence Detail 31981 C57BL/6J ±  kb
transcript OTTMUST00000012655 VEGA | MGI Sequence Detail 5264 Not Applicable 
polypeptide OTTMUSP00000005861 VEGA | MGI Sequence Detail 475 Not Applicable 

For the selected sequences
All sequences(42) RefSeq(5) UniProt(3)
Polymorphisms
SNPs within 2kb(261 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR013057 Amino acid transporter, transmembrane domain
Protein Ontology PR:000015110 proton-coupled amino acid transporter 1
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(32)
Other
accession IDs
MGI:1923260, MGI:2144275

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory