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Dcaf12l2 Gene Detail
Summary
  • Symbol
    Dcaf12l2
  • Name
    DDB1 and CUL4 associated factor 12-like 2
  • Synonyms
    A130007F10Rik, Wdr40c
  • Feature Type
    protein coding gene
  • IDs
    MGI:2445178
    NCBI Gene: 245403
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:43454334-43457214 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 23.85 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    8 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2445178
 protein coding gene ChrX:43454334-43457219 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035680
 protein coding gene ChrX:39429775-39432659 (-)
A/J MGP_AJ_G0035663
 protein coding gene ChrX:39381606-39384490 (-)
AKR/J MGP_AKRJ_G0035583
 protein coding gene ChrX:40377993-40380875 (-)
BALB/cJ MGP_BALBcJ_G0035649
 protein coding gene ChrX:39065758-39068642 (-)
C3H/HeJ MGP_C3HHeJ_G0035353
 protein coding gene ChrX:39741548-39744432 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036178
 protein coding gene ChrX:40348868-40351752 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033030
 protein coding gene ChrX:37310714-37313544 (-)
CAST/EiJ MGP_CASTEiJ_G0034644
 protein coding gene ChrX:27526955-27529848 (-)
CBA/J MGP_CBAJ_G0035327
 protein coding gene ChrX:41480788-41483672 (-)
DBA/2J MGP_DBA2J_G0035481
 protein coding gene ChrX:39164294-39167238 (-)
FVB/NJ MGP_FVBNJ_G0035430
 protein coding gene ChrX:38950298-38953169 (-)
LP/J MGP_LPJ_G0035569
 protein coding gene ChrX:39766118-39769002 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035468
 protein coding gene ChrX:42522916-42525743 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036196
 protein coding gene ChrX:39401723-39404611 (-)
PWK/PhJ MGP_PWKPhJ_G0034343
 protein coding gene ChrX:27009891-27012892 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034188
 protein coding gene ChrX:28110905-28113763 (-)
WSB/EiJ MGP_WSBEiJ_G0034788
 protein coding gene ChrX:39026346-39029229 (-)



Homology
more
  • Human Ortholog
    DCAF12L2, DDB1 and CUL4 associated factor 12 like 2
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    DCAF12L2, DDB1 and CUL4 associated factor 12 like 2
  • Synonyms
    WDR40C
  • Links
    NCBI Gene ID: 340578
    neXtProt AC: NX_Q5VW00
    UniProt: Q5VW00

  • Chr Location
    Xq25; chrX:126163499-126166289 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 245403 NCBI Gene Model | MGI Sequence Detail 2881 C57BL/6J ±  kb
transcript NM_175539 RefSeq | MGI Sequence Detail 2881 C57BL/6  
polypeptide Q8BGW4 UniProt | EBI | MGI Sequence Detail 469 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR001680 WD40 repeat
    IPR036322 WD40-repeat-containing domain superfamily
    IPR015943 WD40/YVTN repeat-like-containing domain superfamily
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 1
References
more
  • Summaries
    All 15
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory